Alternatives and similar repositories for anndata-rs

Users that are interested in anndata-rs are comparing it to the libraries listed below

• regulatory-genomics / precellar
  Universal Single-Cell Genomics Preprocessing package
  ☆48Updated this week
• SingleRust / SingleRust
  Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀
  ☆83Updated last month
• pfizer-opensource / bigwig-loader
  A fast dataloader for bigwig files made for machine learning
  ☆28Updated 3 weeks ago
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆28Updated 2 months ago
• 10XGenomics / enclone
  VDJ Clonotyping & Analysis Tools
  ☆50Updated 10 months ago
• COMBINE-lab / pyroe
  ☆16Updated last year
• scverse / formulaic-contrasts
  Build contrasts for models defined with formulaic
  ☆12Updated 2 weeks ago
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated 2 weeks ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆54Updated last month
• mragsac / BISB-Bootcamp-2021
  FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program
  ☆19Updated 4 years ago
• Marsilea-viz / legendkit
  Legend made easy for matplotlib
  ☆31Updated 7 months ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆65Updated last month
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆105Updated 3 weeks ago
• mikelkou / fava
  Functional Associations using Variational Autoencoders
  ☆40Updated 3 weeks ago
• statbiophys / SONIA
  Infer selection pressures on features of amino acid CDR3 sequences.
  ☆24Updated last year
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• single-cell-data / SOMA
  A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
  ☆82Updated 3 weeks ago
• YosefLab / Cassiopeia
  A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
  ☆97Updated last month
• ML4GLand / SeqData
  Annotated sequence data
  ☆11Updated 11 months ago
• pyranges / bamread
  Bam to Pandas DataFrame, quickly
  ☆13Updated 7 months ago
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆50Updated last week
• b2jia / jie
  A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.
  ☆18Updated 2 years ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆41Updated 2 months ago
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆27Updated this week
• rajewsky-lab / spacemake
  ☆48Updated last week
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆36Updated 3 months ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆54Updated 2 months ago
• COMBINE-lab / simpleaf
  A rust framework to make using alevin-fry even simpler
  ☆60Updated 8 months ago
• HumanCellAtlas / sctools
  Utilities for large scale distributed single cell data processing
  ☆24Updated 3 weeks ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆57Updated 7 months ago