Alternatives and similar repositories for anndata-rs

Users that are interested in anndata-rs are comparing it to the libraries listed below

• SingleRust / SingleRust
  Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀
  ☆85Updated 2 months ago
• regulatory-genomics / precellar
  Universal Single-Cell Genomics Preprocessing package
  ☆48Updated last week
• pfizer-opensource / bigwig-loader
  A fast dataloader for bigwig files made for machine learning
  ☆28Updated last month
• 10XGenomics / enclone
  VDJ Clonotyping & Analysis Tools
  ☆50Updated 10 months ago
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆105Updated this week
• scverse / formulaic-contrasts
  Build contrasts for models defined with formulaic
  ☆12Updated this week
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆54Updated last week
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated this week
• COMBINE-lab / pyroe
  ☆16Updated last year
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆29Updated 2 months ago
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆36Updated 4 months ago
• rajewsky-lab / spacemake
  ☆48Updated last week
• YosefLab / Cassiopeia
  A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
  ☆97Updated last month
• HumanCellAtlas / sctools
  Utilities for large scale distributed single cell data processing
  ☆24Updated last week
• ArpiarSaundersLab / annsql
  The AnnSQL package enables SQL based queries on AnnData objects.
  ☆39Updated 5 months ago
• Marsilea-viz / legendkit
  Legend made easy for matplotlib
  ☆31Updated 7 months ago
• single-cell-data / SOMA
  A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
  ☆82Updated last week
• mragsac / BISB-Bootcamp-2021
  FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program
  ☆19Updated 4 years ago
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆50Updated last week
• cellarium-ai / cellarium-ml
  Distributed single-cell data analysis.
  ☆35Updated last week
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆34Updated last month
• cbg-ethz / scDEF
  Deep exponential families for single-cell data.
  ☆20Updated 2 weeks ago
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆62Updated last month
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆27Updated last week
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆64Updated 2 months ago
• laminlabs / bionty
  Access & manage biological ontologies.
  ☆23Updated last week
• theislab / geome
  ☆15Updated 2 months ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages
  ☆32Updated last week
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆59Updated 8 months ago