p-koo / creme-nnLinks
https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2
☆29Updated 5 months ago
Alternatives and similar repositories for creme-nn
Users that are interested in creme-nn are comparing it to the libraries listed below
Sorting:
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 7 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆63Updated 2 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 3 months ago
- ☆23Updated 10 months ago
- ☆62Updated 3 weeks ago
- Saluki, a method to predict mRNA half-lives from sequence☆24Updated 2 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated 7 months ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆41Updated 3 weeks ago
- Dataloader for applying sequence models to personalized genomics☆26Updated this week
- Predicting gene expression levels from genomic sequences☆53Updated 5 years ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆80Updated 2 weeks ago
- Machine learning methods for DNA sequence analysis.☆50Updated this week
- This repository hosts a minimal version of a Python API for BPNet.☆47Updated last week
- deep learning-inspired explainable sequence model for transcription initiation☆95Updated 4 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last month
- ☆40Updated 3 weeks ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆36Updated last year
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆26Updated 2 years ago
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆15Updated last month
- High-definition modeling of chromatin + transcriptomics data☆24Updated 2 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆43Updated 7 months ago
- ☆26Updated 2 months ago
- ☆21Updated 4 months ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- ☆39Updated last week
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 3 months ago
- Toolset for training quantitative sequence to function models.☆23Updated last year
- Epimap processing and analysis code repository☆33Updated 2 years ago
- ☆29Updated last week
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆90Updated this week