https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2
☆32Jan 22, 2025Updated last year
Alternatives and similar repositories for creme-nn
Users that are interested in creme-nn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Machine learning methods for DNA sequence analysis.☆66Sep 18, 2026Updated last week
- surrogate quantitative interpretability for deepnets☆26Aug 28, 2026Updated 3 weeks ago
- ☆19Oct 21, 2024Updated last year
- TF MOtif Discovery from Importance SCOres☆192Sep 4, 2026Updated 3 weeks ago
- ☆19Mar 21, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆17May 22, 2025Updated last year
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆99Jun 10, 2026Updated 3 months ago
- ☆24Jan 7, 2026Updated 8 months ago
- "Global Importance Analysis: A Method to Quantify Importance of Genomic Features in Deep Neural Networks" by Koo et al.☆15Jun 22, 2022Updated 4 years ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated last year
- ☆22Jul 17, 2024Updated 2 years ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Dec 2, 2024Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- A method for analyzing scATAC-seq experiments.☆33Jun 20, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆12Nov 15, 2024Updated last year
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 4 years ago
- Identifying transcription factor binding sites from neural network contribution scores☆26Aug 26, 2026Updated 3 weeks ago
- ☆52Mar 22, 2026Updated 6 months ago
- Blood Transcription Modules for interpreting blood transcriptomics data☆11Nov 25, 2024Updated last year
- ☆13Jun 28, 2024Updated 2 years ago
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆21Mar 2, 2026Updated 6 months ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆23Feb 1, 2024Updated 2 years ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆10Jan 22, 2026Updated 8 months ago
- Biological sequence analysis for the modern age.☆310Updated this week
- ☆12Jan 31, 2023Updated 3 years ago
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Read, parse and operate different multiple input file formats with OpenVariant☆14Updated this week
- Genomic sequence preprocessing toolkit☆14Jul 27, 2026Updated last month
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆18Apr 20, 2024Updated 2 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆25Jul 29, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Code for the Framepool model☆16Feb 1, 2025Updated last year
- An end-to-end computational pipeline for large Perturb-seq screens☆16Jul 27, 2026Updated last month
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Feb 4, 2023Updated 3 years ago
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Jul 6, 2026Updated 2 months ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆45Jul 3, 2025Updated last year
- Universal Single-Cell Genomics Preprocessing package☆53Sep 15, 2026Updated last week
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆29Feb 21, 2023Updated 3 years ago