☆84Sep 4, 2025Updated 5 months ago
Alternatives and similar repositories for SPLASH
Users that are interested in SPLASH are comparing it to the libraries listed below
Sorting:
- ☆45Sep 17, 2024Updated last year
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- ☆12Feb 19, 2021Updated 5 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- General purpose utility related to GAF files☆29Jan 27, 2026Updated last month
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 9 months ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 6 months ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Nov 20, 2023Updated 2 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Apr 14, 2023Updated 2 years ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆18Feb 2, 2025Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- Everything but the kitchen sink☆12Feb 6, 2025Updated last year
- ☆13Nov 15, 2017Updated 8 years ago
- ☆20Feb 1, 2026Updated last month
- A small, auxiliary index to massively improve parallel fastq parsing☆31Feb 12, 2026Updated 2 weeks ago
- ☆11Dec 15, 2025Updated 2 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Feb 21, 2026Updated last week
- Teaching modules for Human Genome Variation Lab.☆20Jun 6, 2025Updated 8 months ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- Differential k-mer analysis☆40Jan 29, 2024Updated 2 years ago
- COsine SImilarity-based Genotyper using pangenomes☆31Feb 13, 2026Updated 2 weeks ago
- ☆67Apr 9, 2024Updated last year
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 2 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated 10 months ago
- Infering ancestral synteny with hierarchical orthologous groups☆38Oct 17, 2025Updated 4 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆157Feb 1, 2026Updated last month
- Constructing a pangenome gene graph☆204Aug 11, 2025Updated 6 months ago
- Genome browser hub for the T2T genomes and resources☆27Sep 26, 2025Updated 5 months ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- HyPhy standalone analyses☆53Jan 5, 2026Updated last month
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 6 months ago
- ☆24Nov 9, 2017Updated 8 years ago
- Repository☆10Oct 23, 2024Updated last year
- ☆27May 8, 2022Updated 3 years ago