salzman-lab / SPLASHLinks
☆43Updated 11 months ago
Alternatives and similar repositories for SPLASH
Users that are interested in SPLASH are comparing it to the libraries listed below
Sorting:
- ☆80Updated 3 weeks ago
- Simple library/pipeline to generate and handle Hi-C data.☆38Updated 9 months ago
- RPKM for RNASeq counts☆16Updated 4 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 10 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated 3 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆45Updated last month
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last month
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆41Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated 3 weeks ago
- ☆34Updated last year
- ☆33Updated 2 years ago
- PHAST☆74Updated last week
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 months ago
- Merging paired-end reads and removing adapters☆46Updated 5 months ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- perSVade: personalized Structural Variation detection☆40Updated last month
- SingleCell Nanopore sequencing data analysis☆60Updated 3 months ago
- Human reference genome analysis sets☆54Updated 2 years ago
- Scoring GT/AG sites for improving spliced alignment☆45Updated last month
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated 7 months ago
- tutorial on pggb☆35Updated 7 months ago
- parallelized blat with multi-threads support☆53Updated 7 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 3 months ago
- Error correction of ONT transcript reads☆58Updated last year
- Helper scripts for biological data processing from Sentieon☆64Updated last week
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆23Updated 2 months ago