salzman-lab / SPLASHLinks
☆43Updated 10 months ago
Alternatives and similar repositories for SPLASH
Users that are interested in SPLASH are comparing it to the libraries listed below
Sorting:
- Merging paired-end reads and removing adapters☆44Updated 4 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- ☆79Updated last month
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated 2 months ago
- tutorial on pggb☆35Updated 6 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆44Updated last week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 9 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- Simple library/pipeline to generate and handle Hi-C data.☆38Updated 8 months ago
- Helper scripts for biological data processing from Sentieon☆64Updated 8 months ago
- ENCODE long read RNA-seq pipeline☆49Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆50Updated 4 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 2 months ago
- PHAST☆73Updated 3 weeks ago
- Human reference genome analysis sets☆53Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆28Updated 5 months ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- A collection of command line tools for working with sequencing data☆51Updated last month
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- perSVade: personalized Structural Variation detection☆40Updated last week
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆38Updated 5 months ago
- NLR annotation tool☆31Updated last year
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆56Updated 6 months ago
- ☆33Updated 2 years ago