salzman-lab / SPLASHLinks
☆43Updated 9 months ago
Alternatives and similar repositories for SPLASH
Users that are interested in SPLASH are comparing it to the libraries listed below
Sorting:
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 8 months ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆45Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated last year
- Helper scripts for biological data processing from Sentieon☆64Updated 8 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆91Updated last month
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated last month
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated last year
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆63Updated 11 months ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆66Updated 8 months ago
- ☆58Updated 3 years ago
- PHAST☆73Updated this week
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated last month
- ☆40Updated last week
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆50Updated 3 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 2 months ago
- Merging paired-end reads and removing adapters☆44Updated 3 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 8 months ago
- ☆61Updated 10 months ago
- SingleCell Nanopore sequencing data analysis☆60Updated 3 weeks ago
- Digenome-toolkit ver2.☆16Updated 3 years ago
- processing 10x genomics reads☆26Updated 5 years ago
- python plotly Circos from VCF☆38Updated last year
- ☆48Updated 10 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆62Updated 2 weeks ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year