salzman-lab / SPLASH
☆42Updated 4 months ago
Alternatives and similar repositories for SPLASH:
Users that are interested in SPLASH are comparing it to the libraries listed below
- Long-read Isoform Quantification and Analysis☆39Updated 2 weeks ago
- ☆53Updated 3 years ago
- ☆58Updated 5 months ago
- SingleCell Nanopore sequencing data analysis☆53Updated last month
- ☆75Updated 2 weeks ago
- Merging paired-end reads and removing adapters☆45Updated 4 years ago
- New version of JACUSA -> 2.0☆23Updated last week
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆61Updated 6 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- Digenome-toolkit ver2.☆16Updated 3 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆81Updated 5 months ago
- Error correction of ONT transcript reads☆58Updated last year
- ENCODE long read RNA-seq pipeline☆44Updated 2 years ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- ☆51Updated 6 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 5 years ago
- Pair-End AssembeR☆29Updated 10 years ago
- A Perl/R pipeline for plotting metagenes☆36Updated 3 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆40Updated 3 months ago
- PHAST☆71Updated last month
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆35Updated last year
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated 10 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 3 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 2 months ago
- Dfam Transposable Element Tools Docker container.☆87Updated last month
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆57Updated 3 months ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆72Updated last year