rcannood / SCORPIUS
Linear trajectory inference for single-cell RNA-seq
☆59Updated 10 months ago
Alternatives and similar repositories for SCORPIUS:
Users that are interested in SCORPIUS are comparing it to the libraries listed below
- A tool for removing doublets from single-cell RNA-seq data☆71Updated 4 years ago
- Clone of the Bioconductor repository for the scran package.☆41Updated 5 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆93Updated 4 years ago
- ☆59Updated 5 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆64Updated 7 months ago
- Cell type pipes for R☆51Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆93Updated last year
- ☆53Updated 4 years ago
- An R-based interface for loom files☆66Updated 4 years ago
- Normalize CITEseq Data☆65Updated 8 months ago
- Clone of the Bioconductor repository for the DropletUtils package.☆56Updated 2 months ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆40Updated 3 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated 2 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆72Updated 5 months ago
- Various utility functions for Seurat single-cell analysis☆45Updated 2 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆47Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆46Updated 3 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆71Updated 3 years ago
- Single Cell Cluster Evaluation☆91Updated 3 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated last year
- R package for semi-supervised single-cell data integration☆79Updated last year
- Explore and share your scRNAseq clustering results☆48Updated last year
- ☆44Updated 5 years ago
- Toolkit for Single-Cell Velocity☆54Updated last month
- R package for specialised analysis of single cell data☆37Updated 2 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- A R package for advanced single cell data viz☆63Updated last year
- ☆46Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year