Alternatives and similar repositories for SCORPIUS

Users that are interested in SCORPIUS are comparing it to the libraries listed below

• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆96Updated 4 years ago
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆42Updated 10 months ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆85Updated last week
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆94Updated 3 years ago
• ggjlab / scMCA
  Mouse cell atlas
  ☆60Updated 5 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆66Updated 3 months ago
• elimereu / matchSCore2
  ☆55Updated 4 years ago
• theislab / destiny
  R package for single cell and other data analysis using diffusion maps
  ☆88Updated 7 months ago
• shenorrLabTRDF / cellAlign
  ☆41Updated 4 years ago
• NathanSkene / EWCE
  Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
  ☆59Updated 5 months ago
• MarioniLab / DropletUtils
  Clone of the Bioconductor repository for the DropletUtils package.
  ☆60Updated 2 weeks ago
• cozygene / bisque
  An R toolkit for estimation of cell composition from bulk expression data
  ☆74Updated last month
• lhe17 / nebula
  ☆41Updated last month
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated last year
• Coolgenome / iTALK
  ☆62Updated 5 years ago
• faryabib / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆45Updated 3 years ago
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆62Updated 3 years ago
• vertesy / Seurat.utils
  Various utility functions for Seurat single-cell analysis
  ☆51Updated 7 months ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆51Updated last year
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆115Updated 2 months ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆84Updated 2 months ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆92Updated 6 months ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆41Updated last year
• mojaveazure / loomR
  An R-based interface for loom files
  ☆66Updated 5 years ago
• maggiecrow / MetaNeighbor
  ☆49Updated 7 years ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆70Updated 11 months ago
• KlugerLab / DAseq
  ☆41Updated 4 years ago
• mahmoudibrahim / genesorteR
  Feature Ranking in (possibly large) Clustered Single Cell Data
  ☆40Updated 4 years ago
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆58Updated last week