Alternatives and similar repositories for SCORPIUS:

Users that are interested in SCORPIUS are comparing it to the libraries listed below

• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆73Updated 4 years ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆95Updated 4 years ago
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆41Updated 8 months ago
• BaderLab / scClustViz
  Explore and share your scRNAseq clustering results
  ☆50Updated last year
• Coolgenome / iTALK
  ☆60Updated 5 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆45Updated last year
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆94Updated last year
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆38Updated 2 years ago
• ggjlab / scMCA
  Mouse cell atlas
  ☆59Updated 5 years ago
• elimereu / matchSCore2
  ☆55Updated 4 years ago
• mojaveazure / loomR
  An R-based interface for loom files
  ☆66Updated 4 years ago
• livnatje / ImmuneResistance
  This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…
  ☆72Updated 6 years ago
• MarioniLab / DropletUtils
  Clone of the Bioconductor repository for the DropletUtils package.
  ☆57Updated 4 months ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆77Updated 8 months ago
• lhe17 / nebula
  ☆41Updated last month
• mahmoudibrahim / genesorteR
  Feature Ranking in (possibly large) Clustered Single Cell Data
  ☆40Updated 4 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆65Updated last month
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆66Updated 9 months ago
• shenorrLabTRDF / cellAlign
  ☆41Updated 4 years ago
• vertesy / Seurat.utils
  Various utility functions for Seurat single-cell analysis
  ☆47Updated 5 months ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆81Updated last month
• maggiecrow / MetaNeighbor
  ☆50Updated 7 years ago
• krasnowlab / HLCA
  ☆61Updated 3 years ago
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated last year
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆94Updated 3 years ago
• saeyslab / FlowSOM
  Using self-organizing maps for visualization and interpretation of cytometry data
  ☆27Updated last month
• Japrin / sscClust
  simpler single cell RNAseq data clustering
  ☆40Updated 2 months ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆51Updated last year
• GIS-SP-Group / RCA
  R package for robust clustering of single cell RNA sequencing data
  ☆39Updated last year
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆44Updated last year