Alternatives and similar repositories for SCORPIUS

Users that are interested in SCORPIUS are comparing it to the libraries listed below

• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆95Updated 4 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• alexisvdb / singleCellHaystack
  Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
  ☆85Updated 11 months ago
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆43Updated 11 months ago
• cozygene / bisque
  An R toolkit for estimation of cell composition from bulk expression data
  ☆77Updated 2 months ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆97Updated 4 years ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆92Updated 8 months ago
• BaderLab / scClustViz
  Explore and share your scRNAseq clustering results
  ☆50Updated last year
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆51Updated last year
• theislab / destiny
  R package for single cell and other data analysis using diffusion maps
  ☆88Updated 9 months ago
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆94Updated 9 months ago
• ggjlab / scMCA
  Mouse cell atlas
  ☆61Updated 5 years ago
• elimereu / matchSCore2
  ☆55Updated 4 years ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆38Updated 2 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆66Updated 4 months ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆88Updated last month
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆124Updated 4 months ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆70Updated last year
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• GIS-SP-Group / RCA
  R package for robust clustering of single cell RNA sequencing data
  ☆40Updated 2 years ago
• NathanSkene / EWCE
  Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
  ☆60Updated 6 months ago
• mojaveazure / loomR
  An R-based interface for loom files
  ☆67Updated 5 years ago
• xmc811 / Scillus
  R Package for Single-Cell Dataset Processing and Visualization
  ☆63Updated 4 years ago
• lhe17 / nebula
  ☆41Updated 2 months ago
• iaconogi / bigSCale2
  Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
  ☆104Updated 2 years ago
• vertesy / Seurat.utils
  Various utility functions for Seurat single-cell analysis
  ☆53Updated last week
• Coolgenome / iTALK
  ☆62Updated 6 years ago
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated last year
• shenorrLabTRDF / cellAlign
  ☆42Updated 4 years ago
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆68Updated 5 years ago