rcannood / SCORPIUS
Linear trajectory inference for single-cell RNA-seq
☆58Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for SCORPIUS
- A tool for removing doublets from single-cell RNA-seq data☆69Updated 3 years ago
- Clone of the Bioconductor repository for the scran package.☆40Updated 2 months ago
- ☆53Updated 3 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆89Updated 4 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆56Updated last month
- R package for specialised analysis of single cell data☆36Updated 2 years ago
- Single Cell Cluster Evaluation☆87Updated 3 years ago
- ☆58Updated 5 years ago
- An R-based interface for loom files☆63Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆68Updated 2 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆89Updated 11 months ago
- Cell type pipes for R☆51Updated 9 months ago
- Normalize CITEseq Data☆63Updated 5 months ago
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆89Updated this week
- ☆55Updated 2 months ago
- ☆37Updated 3 years ago
- scDataviz: single cell dataviz and downstream analyses☆61Updated 3 years ago
- Mouse cell atlas☆59Updated 4 years ago
- Explore and share your scRNAseq clustering results☆46Updated last year
- Methods to discover gene programs on single-cell data☆84Updated this week
- Toolkit for Single-Cell Velocity☆55Updated last month
- R package for semi-supervised single-cell data integration☆75Updated 9 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆59Updated 4 months ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆31Updated last year
- An R toolkit for estimation of cell composition from bulk expression data☆68Updated 3 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆54Updated 3 weeks ago
- R package for single cell and other data analysis using diffusion maps☆77Updated last week
- marker-based purification of cell types from single-cell RNA-seq datasets☆92Updated 5 months ago
- "Principles of Spatial Transcriptomics Analysis with Bioconductor" book☆41Updated 3 weeks ago