vjcitn / BiocOncoTKView external linksLinks
Bioconductor components for general cancer genomics
☆11Feb 5, 2023Updated 3 years ago
Alternatives and similar repositories for BiocOncoTK
Users that are interested in BiocOncoTK are comparing it to the libraries listed below
Sorting:
- Helper script for bioconductor/bioconductor_docker☆13Updated this week
- Template for building a bioconductor workshop package using github actions☆21Jun 26, 2025Updated 7 months ago
- The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer☆11Oct 30, 2025Updated 3 months ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- ☆11Sep 5, 2018Updated 7 years ago
- Develop and host GitHub actions for Bioconductor☆11Apr 22, 2021Updated 4 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- Targeted and non-targeted anticancer drugs and drug regimens☆30Jan 21, 2026Updated 3 weeks ago
- Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import☆28Oct 30, 2025Updated 3 months ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Aug 3, 2024Updated last year
- R package for generating beautiful and customizable plots for the exons and introns of any gene☆12Jul 26, 2021Updated 4 years ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆16Dec 28, 2022Updated 3 years ago
- HTSanalyzeR2: A R package for gene set enrichment and network analysis of various high-throughput data☆15Dec 2, 2020Updated 5 years ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆18Mar 18, 2025Updated 10 months ago
- Take command of your set enrichment analyses.☆23Updated this week
- A hacky little interface to call the Enrichr functional enrichment tool from R.☆13Dec 13, 2018Updated 7 years ago
- ☆16Apr 27, 2023Updated 2 years ago
- HGNC Comparison of Orthology Predictions (HCOP)☆14Mar 22, 2018Updated 7 years ago
- Modular & interactive analysis components for bioinformatics☆18Dec 9, 2025Updated 2 months ago
- Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows☆14Jun 27, 2018Updated 7 years ago
- A GenePattern module for running the ssGSEA method☆14Mar 3, 2025Updated 11 months ago
- Allele frequency filter app☆14May 4, 2022Updated 3 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Jan 6, 2022Updated 4 years ago
- Introduction to the Bioconductor project☆19Oct 17, 2025Updated 3 months ago
- ☆41Apr 16, 2018Updated 7 years ago
- R package☆22Dec 16, 2023Updated 2 years ago
- A "CRAN extras" repository of some binary R packages for the Homebrew (cask) version of base R on macOS☆23Oct 6, 2022Updated 3 years ago
- download files in R using wget -c☆16Aug 20, 2025Updated 5 months ago
- Text mining cancer biomarkers for the CIVIC database☆23Dec 16, 2025Updated last month
- 🔮 Benchmarking and visualization toolkit for penalized Cox models☆47Jun 9, 2025Updated 8 months ago
- Quantifying copy number signatures from absolute copy number profiles☆26Jul 23, 2025Updated 6 months ago
- Explore the cancer relevance of your gene list☆52Dec 17, 2025Updated last month
- R package to plot decision curves☆28Oct 16, 2018Updated 7 years ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Jan 30, 2026Updated 2 weeks ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Feb 14, 2021Updated 5 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆25Jan 28, 2026Updated 2 weeks ago
- Pathway-based trajectory inference method for time-series scRNAseq data☆25May 18, 2021Updated 4 years ago
- Integrating zingeR with ZINB-WaVE weights☆26Feb 15, 2018Updated 7 years ago