Bioconductor components for general cancer genomics
☆11Feb 5, 2023Updated 3 years ago
Alternatives and similar repositories for BiocOncoTK
Users that are interested in BiocOncoTK are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer☆13Oct 6, 2026Updated 3 weeks ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- R package for generating beautiful and customizable plots for the exons and introns of any gene☆12Jul 26, 2021Updated 5 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profile…☆11Jul 22, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆12Mar 2, 2023Updated 3 years ago
- CALISTA: Clustering And Lineage Inference in Single Cell Transcriptional Analysis☆10May 16, 2019Updated 7 years ago
- Time to learn DSL2☆10Feb 9, 2023Updated 3 years ago
- Analysies of gene expression data using Gene Ontology☆10Sep 3, 2025Updated last year
- Sample Level Analysis of Pathway Alteration Enrichments☆10Jan 21, 2019Updated 7 years ago
- Targeted and non-targeted anticancer drugs and drug regimens☆31Oct 22, 2026Updated last week
- Flexible gene set enrichment analysis☆11Aug 30, 2021Updated 5 years ago
- Helper script for bioconductor/bioconductor_docker☆13May 19, 2026Updated 5 months ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆19Dec 28, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆36Oct 7, 2026Updated 3 weeks ago
- Explore the cancer relevance of your gene list☆55Aug 11, 2026Updated 2 months ago
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated 2 months ago
- Text mining cancer biomarkers for the CIVIC database☆23Oct 23, 2026Updated last week
- Single cell ANANSE Gene-regulatory-network analysis from Seurat objects☆11Sep 9, 2026Updated last month
- ☆41Apr 16, 2018Updated 8 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Sep 2, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆27Jun 5, 2025Updated last year
- anor: an annotation and visualization system based on R and Shiny framework☆32Apr 20, 2020Updated 6 years ago
- Develop and host GitHub actions for Bioconductor☆11Apr 22, 2021Updated 5 years ago
- Template for building a bioconductor workshop package using github actions☆23Aug 5, 2026Updated 2 months ago
- Allele frequency filter app☆15May 4, 2022Updated 4 years ago
- Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import☆31Apr 28, 2026Updated 6 months ago
- C++ implementation of the SEM algorithm☆16Dec 18, 2024Updated last year
- Regulatory network inference and driver gene evaluation using integrative multi-omics analysis and penalized regression☆18Jan 26, 2026Updated 9 months ago
- ☆37Jul 28, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆13Jul 31, 2026Updated 3 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆20Dec 8, 2020Updated 5 years ago
- LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution an…☆16Apr 7, 2026Updated 6 months ago
- Calculate and plot distributions of genomic ranges☆27Apr 23, 2025Updated last year
- ☆15Nov 21, 2025Updated 11 months ago
- Extended ComplexHeatmap☆12Jan 5, 2025Updated last year
- FInding REliable Variants without ArTifacts☆21Nov 18, 2022Updated 3 years ago