Alternatives and similar repositories for dynmethods

Users that are interested in dynmethods are comparing it to the libraries listed below

• dynverse / dyno
  Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
  ☆185Updated 4 years ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆98Updated 4 years ago
• cole-trapnell-lab / garnett
  Automated cell type classification
  ☆115Updated last year
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆203Updated last year
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆185Updated 2 years ago
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆180Updated last year
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆195Updated 2 weeks ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆124Updated last year
• quadbio / Pando
  Multiome GRN inference.
  ☆131Updated last year
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆174Updated 9 months ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆122Updated 2 years ago
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆139Updated 2 years ago
• GregorySchwartz / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆114Updated last year
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆107Updated 2 years ago
• csoneson / conquer_comparison
  Code for evaluation of differential expression methods in single-cell RNA-seq data
  ☆112Updated 5 years ago
• farrellja / URD
  URD - Reconstruction of Branching Developmental Trajectories
  ☆126Updated 4 years ago
• theislab / anndata2ri
  Convert between AnnData and SingleCellExperiment
  ☆143Updated 3 weeks ago
• Irrationone / cellassign
  Automated, probabilistic assignment of cell types in scRNA-seq data
  ☆209Updated 3 years ago
• rnakato / ShortCake
  A docker image for single-cell analysis
  ☆103Updated 2 months ago
• rajewsky-lab / novosparc
  ☆131Updated 2 years ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆201Updated this week
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆169Updated last year
• czbiohub-sf / tabula-muris
  Code and annotations for the Tabula Muris single-cell transcriptomic dataset.
  ☆195Updated 2 years ago
• mohuangx / SAVER
  Single-cell RNA-seq Gene Expression Recovery
  ☆112Updated last year
• Nanostring-Biostats / CosMx-Analysis-Scratch-Space
  This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…
  ☆89Updated 3 weeks ago
• velocyto-team / velocyto.R
  RNA velocity estimation in R
  ☆192Updated 2 years ago
• interactivereport / cellxgene_VIP
  Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…
  ☆161Updated 2 months ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆113Updated 2 years ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆141Updated last year
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆254Updated this week