dynverse / dynmethodsLinks
A collection of 50+ trajectory inference methods within a common interface 📥📤
☆129Updated last year
Alternatives and similar repositories for dynmethods
Users that are interested in dynmethods are comparing it to the libraries listed below
Sorting:
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆180Updated 4 years ago
- A Bayesian model for compositional single-cell data analysis☆165Updated 2 years ago
- Multiome GRN inference.☆124Updated last year
- Conversion between scRNA-seq objects☆176Updated last week
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- Fast Wilcoxon and auROC☆182Updated 7 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆116Updated 9 months ago
- Cell type prioritization in single-cell data☆120Updated 8 months ago
- reticulate-free single cell format conversion☆160Updated 6 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆147Updated 5 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆208Updated 10 months ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 4 years ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆207Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆162Updated 2 months ago
- Single-Cell Clustering Assessment Framework☆101Updated last year
- Gene set scoring for single-cell data☆153Updated last month
- Automated cell type classification☆110Updated 5 months ago
- SingleCellNet: classify single cells across species and platforms☆137Updated last year
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆297Updated last year
- BANKSY: spatial clustering☆112Updated last week
- A Shiny web app for mapping datasets using Seurat v4☆130Updated 7 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆105Updated 2 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆148Updated 4 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- RNA velocity estimation in R☆186Updated last year
- ☆172Updated last month
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆162Updated last year
- scDIOR: Single cell data IO softwaRe☆141Updated 3 years ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆198Updated last month