dynverse / dynmethodsLinks
A collection of 50+ trajectory inference methods within a common interface ๐ฅ๐ค
โ130Updated last year
Alternatives and similar repositories for dynmethods
Users that are interested in dynmethods are comparing it to the libraries listed below
Sorting:
- Single Cell Cluster Evaluationโ98Updated 4 years ago
- A Bayesian model for compositional single-cell data analysisโ178Updated 2 years ago
- URD - Reconstruction of Branching Developmental Trajectoriesโ125Updated 4 years ago
- Automated cell type classificationโ112Updated 10 months ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages ๐ฆโ183Updated 4 years ago
- A Shiny web app for mapping datasets using Seurat v4โ136Updated last year
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq dataโ122Updated 2 years ago
- Efficient and precise single-cell reference atlas mapping with Symphonyโ111Updated last week
- Fast Wilcoxon and auROCโ194Updated last year
- SingleCellNet: classify single cells across species and platformsโ139Updated 2 years ago
- AUCell: score single cells with gene regulatory networksโ173Updated last year
- Significance analysis for clustering single-cell RNA-sequencing dataโ119Updated last year
- Multiome GRN inference.โ130Updated last year
- Conversion between scRNA-seq objectsโ191Updated last week
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics dataโ168Updated 7 months ago
- Code for evaluation of differential expression methods in single-cell RNA-seq dataโ112Updated 5 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.โ168Updated last year
- Framework for sensitive DE testing (using neighbourhoods)โ74Updated 2 weeks ago
- Single-Cell Clustering Assessment Frameworkโ105Updated 2 years ago
- Detect doublets in single-cell RNA-seq dataโ86Updated 6 years ago
- Convert between AnnData and SingleCellExperimentโ142Updated last week
- Cell type prioritization in single-cell dataโ126Updated last year
- This repository is an exploratory resource to accelerate opensource analysis of CosMxยฎ Spatial Molecular Imager (SMI) data. Contained herโฆโ83Updated this week
- RNA velocity estimation in Rโ190Updated 2 years ago
- โ70Updated last year
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Dataโ151Updated 8 months ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.โ114Updated last year
- R package for Pathway RespOnsive GENe activity inferenceโ110Updated 2 years ago
- AnnData interoperability in Rโ121Updated this week
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.โ79Updated 9 months ago