dynverse / dynmethodsLinks
A collection of 50+ trajectory inference methods within a common interface π₯π€
β130Updated last year
Alternatives and similar repositories for dynmethods
Users that are interested in dynmethods are comparing it to the libraries listed below
Sorting:
- Automated cell type classificationβ112Updated 9 months ago
- Fast Wilcoxon and auROCβ189Updated 11 months ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages π¦β183Updated 4 years ago
- A Bayesian model for compositional single-cell data analysisβ176Updated 2 years ago
- Single Cell Cluster Evaluationβ97Updated 4 years ago
- AUCell: score single cells with gene regulatory networksβ169Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics dataβ168Updated 6 months ago
- Significance analysis for clustering single-cell RNA-sequencing dataβ119Updated last year
- URD - Reconstruction of Branching Developmental Trajectoriesβ124Updated 4 years ago
- Efficient and precise single-cell reference atlas mapping with Symphonyβ111Updated 2 years ago
- Conversion between scRNA-seq objectsβ187Updated last month
- Multiome GRN inference.β128Updated last year
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq dataβ122Updated 2 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq dataβ112Updated 5 years ago
- Single-Cell Clustering Assessment Frameworkβ105Updated last year
- β131Updated last year
- A Shiny web app for mapping datasets using Seurat v4β132Updated 11 months ago
- Comparison of methods for trajectory inference on single-cell data π₯β215Updated 2 years ago
- reticulate-free single cell format conversionβ187Updated 2 weeks ago
- Detect doublets in single-cell RNA-seq dataβ86Updated 6 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.β168Updated last year
- Single-cell RNA-seq Gene Expression Recoveryβ111Updated 10 months ago
- SingleCellNet: classify single cells across species and platformsβ138Updated 2 years ago
- Metacell - Single-cell mRNA Analysisβ117Updated 8 months ago
- Methods to discover gene programs on single-cell dataβ152Updated 2 weeks ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transβ¦β163Updated last month
- RNA velocity estimation in Rβ189Updated 2 years ago
- RNA velocity estimation in Pythonβ172Updated this week
- Signature Analysis and Visualization for Single-Cell RNA-seqβ172Updated last year
- Cell type prioritization in single-cell dataβ125Updated 11 months ago