Alternatives and similar repositories for dynmethods:

Users that are interested in dynmethods are comparing it to the libraries listed below

• dynverse / dyno
  Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
  ☆176Updated 3 years ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆158Updated last year
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆130Updated 3 months ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆112Updated 6 months ago
• quadbio / Pando
  Multiome GRN inference.
  ☆119Updated 10 months ago
• campbio / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆147Updated 3 weeks ago
• cole-trapnell-lab / garnett
  Automated cell type classification
  ☆111Updated 2 months ago
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆162Updated last month
• dynverse / dynbenchmark
  Comparison of methods for trajectory inference on single-cell data 🥇
  ☆205Updated last year
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆143Updated 4 months ago
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆135Updated last year
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆160Updated this week
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆175Updated 4 months ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆92Updated 3 years ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆140Updated last month
• csoneson / conquer_comparison
  Code for evaluation of differential expression methods in single-cell RNA-seq data
  ☆112Updated 4 years ago
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆155Updated 8 months ago
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆112Updated 4 months ago
• velocyto-team / velocyto.R
  RNA velocity estimation in R
  ☆186Updated last year
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆177Updated 3 weeks ago
• Nanostring-Biostats / CosMx-Analysis-Scratch-Space
  This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…
  ☆56Updated this week
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆193Updated 7 months ago
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆87Updated 3 months ago
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆102Updated last week
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated 2 years ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆136Updated 3 years ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆103Updated 2 years ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆184Updated 3 weeks ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆122Updated 4 months ago
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆161Updated last year