A collection of 50+ trajectory inference methods within a common interface 📥📤
☆131Dec 21, 2023Updated 2 years ago
Alternatives and similar repositories for dynmethods
Users that are interested in dynmethods are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Comparison of methods for trajectory inference on single-cell data 🥇☆222Aug 30, 2023Updated 2 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆186Jun 24, 2021Updated 4 years ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆441Apr 28, 2026Updated last month
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆242May 23, 2020Updated 6 years ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆382Oct 3, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,744Jun 1, 2026Updated last week
- A common data format and inference environment for single-cell trajectories 📦☆19Mar 31, 2026Updated 2 months ago
- Scripts to reproduce analyses of tradeSeq paper.☆16Feb 5, 2020Updated 6 years ago
- pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …☆20Apr 14, 2026Updated last month
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆77May 20, 2021Updated 5 years ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated 10 months ago
- Community-provided extensions to Seurat☆365Feb 17, 2026Updated 3 months ago
- Automated cell type classification☆116Jan 3, 2025Updated last year
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆225Apr 26, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for detecting differential distributions using a statistical test based on the wasserstein distance☆28Nov 7, 2025Updated 7 months ago
- Linear trajectory inference for single-cell RNA-seq☆63Nov 26, 2025Updated 6 months ago
- URD - Reconstruction of Branching Developmental Trajectories☆127Jun 29, 2021Updated 4 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆27Mar 3, 2020Updated 6 years ago
- ☆18Jun 13, 2019Updated 6 years ago
- Fast Wilcoxon and auROC☆212May 5, 2026Updated last month
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆241May 8, 2023Updated 3 years ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆32Dec 9, 2021Updated 4 years ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reference mapping for single-cell genomics☆405Mar 21, 2026Updated 2 months ago
- Table of software for the analysis of single-cell RNA-seq data.☆340Updated this week
- Python implementation of the Loom file format - http://loompy.org☆149Dec 16, 2024Updated last year
- A list of scRNA-seq analysis tools☆792May 17, 2026Updated 3 weeks ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- single nuclei RNA-seq analysis toolbox☆10Oct 26, 2016Updated 9 years ago
- Scissor package☆267May 10, 2024Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Tools and methods for analysis of single cell assay data in R☆264Oct 17, 2025Updated 7 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Single cell typing based on cell ontology☆54Dec 10, 2023Updated 2 years ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19May 6, 2019Updated 7 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆329Nov 1, 2022Updated 3 years ago
- Population balance analysis☆46Apr 25, 2019Updated 7 years ago
- Clustering scRNAseq by genotypes☆206Apr 30, 2026Updated last month
- R package for analyzing single-cell RNA-seq data☆180Feb 29, 2024Updated 2 years ago
- ☆454May 26, 2026Updated 2 weeks ago