hbc / bcbioSingleCell
R package for bcbio single-cell RNA-seq analysis.
☆29Updated 6 months ago
Alternatives and similar repositories for bcbioSingleCell:
Users that are interested in bcbioSingleCell are comparing it to the libraries listed below
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated last week
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- Identify and correct invalid gene symbols☆59Updated 4 months ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 2 weeks ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆17Updated 7 years ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- Bead-based single-cell atac processing☆31Updated 3 years ago
- An r package that works as a wrapper to homologene☆43Updated last year
- ☆28Updated 6 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆44Updated last year
- ☆62Updated 2 weeks ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 8 years ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆30Updated 7 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 9 months ago
- ☆53Updated last month
- ☆59Updated 6 months ago
- Documents used for workshops on single cell analysis☆27Updated 8 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 5 years ago
- ☆53Updated 4 years ago
- Pipeline for SpatialTranscriptomics and 10X Visium data☆21Updated 7 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- R package to visualize scRNA sequencing data.☆20Updated 3 years ago
- ☆40Updated 6 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year