hbc / bcbioSingleCellLinks
R package for bcbio single-cell RNA-seq analysis.
☆30Updated last year
Alternatives and similar repositories for bcbioSingleCell
Users that are interested in bcbioSingleCell are comparing it to the libraries listed below
Sorting:
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Identify and correct invalid gene symbols☆60Updated 11 months ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 7 months ago
- ☆55Updated 8 months ago
- ☆63Updated 7 months ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
- An r package that works as a wrapper to homologene☆46Updated 2 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆24Updated 4 months ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Normalization for single cell RNA-seq data☆49Updated 4 months ago
- Reactome Pathway Analysis☆43Updated 6 months ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- ☆41Updated 7 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆45Updated 3 weeks ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆66Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆31Updated 2 months ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆30Updated 6 years ago
- ☆55Updated 4 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆49Updated 2 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆42Updated 4 years ago
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- consistent quantification of external RNA-seq data sets☆58Updated last year