denglab / SeqSero2
SeqSero2
☆35Updated 11 months ago
Alternatives and similar repositories for SeqSero2:
Users that are interested in SeqSero2 are comparing it to the libraries listed below
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆27Updated last week
- whole genome MLST analysis☆41Updated this week
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆60Updated 2 months ago
- IS mapping software☆53Updated 3 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 11 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆47Updated 2 months ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆35Updated 2 weeks ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆43Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆59Updated last month
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13Updated 6 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated 11 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆75Updated 7 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆64Updated 4 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- all methods related to Enterobase☆40Updated 6 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 11 months ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 4 months ago
- Code Safety Inspection Service☆20Updated 2 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆45Updated last month
- Standard database for the TBProfiler tool☆29Updated 3 weeks ago
- ☆81Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- A MinION-based pipeline for tracking species biodiversity☆13Updated last year