denglab / SeqSero2
SeqSero2
☆34Updated 10 months ago
Alternatives and similar repositories for SeqSero2:
Users that are interested in SeqSero2 are comparing it to the libraries listed below
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆27Updated 2 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 10 months ago
- whole genome MLST analysis☆40Updated 9 months ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- Split Kmer Analysis☆62Updated 2 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆42Updated last year
- Code Safety Inspection Service☆20Updated 2 years ago
- A MinION-based pipeline for tracking species biodiversity☆13Updated last year
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- IS mapping software☆53Updated 3 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆102Updated this week
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆39Updated 3 months ago
- ☆36Updated 2 years ago
- all methods related to Enterobase☆39Updated 5 months ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13Updated 6 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆60Updated last month
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Recombination-free trees☆57Updated last year
- Sorts amplicons from Nanopore sequencing data based on similarity☆34Updated 4 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆45Updated last month
- A pipeline for running AMRfinderPlus and collating results into functional classes☆74Updated 6 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆58Updated this week
- ☆52Updated 3 years ago
- Basic workflow for nanopore sequencing data☆15Updated 3 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 4 months ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆40Updated 3 years ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- Fast genealogical relationship evaluation of bacterial isolates with WGS data.☆12Updated 3 years ago