denglab / SeqSero2Links
SeqSero2
☆38Updated last year
Alternatives and similar repositories for SeqSero2
Users that are interested in SeqSero2 are comparing it to the libraries listed below
Sorting:
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆73Updated last year
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated 2 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆72Updated last month
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- whole genome MLST analysis☆46Updated last month
- a collection of scripts for organising bacterial genomes by species☆77Updated 3 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Split Kmer Analysis☆65Updated 3 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆45Updated 8 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated last year
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 4 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 5 years ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆32Updated 3 months ago
- all methods related to Enterobase☆43Updated 11 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆49Updated last week
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆45Updated 2 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆38Updated 2 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 5 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 3 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆79Updated 11 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆47Updated 4 months ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆29Updated 3 weeks ago
- IS mapping software☆56Updated 3 years ago
- Bifrost graph gene caller.☆95Updated 10 months ago
- Split k-mer analysis – version 2☆87Updated 2 weeks ago