Alternatives and similar repositories for PyGly

Users that are interested in PyGly are comparing it to the libraries listed below

• andyposbe / ColabFold-Pipeline-Toolkit
  The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
  ☆16Updated last year
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆41Updated last year
• fermo-metabolomics / FERMO
  Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.
  ☆32Updated 3 weeks ago
• amaurypm / pseqsid
  Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.
  ☆17Updated last year
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆28Updated 2 years ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆26Updated last month
• BTheDragonMaster / RAIChU
  Reaction Analysis through Imaging of Chemical Units
  ☆16Updated last week
• jafetgado / PyCanal
  Conservation analysis of homologous proteins with Python
  ☆12Updated 4 years ago
• madeleineernst / pyMolNetEnhancer
  ☆21Updated 2 years ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆156Updated 10 months ago
• iomega / ms2query
  MS2Query - machine learning assisted library querying of MS/MS spectra
  ☆49Updated 5 months ago
• Merck / bgc-pipeline
  ☆12Updated 10 months ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆51Updated 3 years ago
• Gscorreia89 / chemometrics-tutorials
  ☆15Updated 2 years ago
• tyo-nu / MINE-Database
  Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic
  ☆20Updated last year
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆73Updated this week
• jbloomlab / SARS2-mut-fitness
  Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates
  ☆21Updated 11 months ago
• wrf / pdbcolor
  Python code to color a PDB structure based on parameters from a multiple sequence alignment
  ☆32Updated 2 years ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆46Updated last month
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆22Updated 5 months ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆75Updated 3 months ago
• NPLinker / nplinker
  A python framework for microbial natural products data mining by integrating genomics and metabolomics data
  ☆21Updated last month
• tiagolbiotech / NPOmix_python
  ☆14Updated 2 years ago
• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆27Updated 9 months ago
• biocore / q2-qemistree
  Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".
  ☆30Updated 2 years ago
• hiyama341 / teemi
  teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …
  ☆41Updated last week
• CCMS-UCSD / GNPS_Workflows
  Public Workflows at GNPS
  ☆64Updated last year
• mobiusklein / glypy
  Glycan Analysis and Glycoinformatics Library for Python
  ☆36Updated 5 months ago
• ablab / npdtools
  Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…
  ☆28Updated 3 years ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆47Updated 6 years ago