☆13Sep 4, 2017Updated 8 years ago
Alternatives and similar repositories for accnet
Users that are interested in accnet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆51Feb 2, 2021Updated 5 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- A taxonomic classifier of plasmids☆29Jul 7, 2021Updated 4 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆37Feb 26, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆121Jan 22, 2025Updated last year
- Archived - please see updated sccmec tool at link below☆13Aug 30, 2024Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Apr 16, 2024Updated last year
- code repo for mobileOG-db☆46Nov 6, 2025Updated 4 months ago
- A nextflow pipeline for performing bacterial RNA-Seq data analysis.☆12Oct 14, 2025Updated 5 months ago
- IslandPath standalone software☆36Nov 7, 2023Updated 2 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆86May 7, 2025Updated 10 months ago
- ☆33Apr 15, 2024Updated last year
- Whole genome core alignments from multiple draft genomes☆13Sep 14, 2016Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated last year
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆33Jun 17, 2024Updated last year
- transposable element typing pipeline☆19Mar 8, 2024Updated 2 years ago
- ☆10Jun 9, 2025Updated 9 months ago
- snapper☆13Jul 8, 2024Updated last year
- Software for prediction of plasmid sequences in metagenomic assemblies☆110Jun 28, 2021Updated 4 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆172Apr 16, 2025Updated 11 months ago
- Automatically exported from code.google.com/p/qsimscan☆14Oct 10, 2021Updated 4 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆97Dec 9, 2025Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆70Feb 23, 2026Updated last month
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Apr 20, 2023Updated 2 years ago
- Parallel/Homoplasic SNP Finder☆21May 3, 2023Updated 2 years ago
- Calculate fastq reads and sequencing coverage☆15Oct 20, 2020Updated 5 years ago
- Hierarchical clustering of cgMLST☆13Nov 20, 2023Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Feb 9, 2022Updated 4 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆15Apr 29, 2022Updated 3 years ago
- ARGpore2☆13Sep 12, 2024Updated last year
- PLSDB pipeline to collect bacterial plasmids from NCBI☆40Oct 23, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 3 weeks ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Jul 20, 2018Updated 7 years ago
- Build a partitioned pangenome graph from microbial genomes☆296Updated this week
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- Genomewide Epistasis Analysis on Bacteria☆15May 13, 2025Updated 10 months ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆44May 8, 2024Updated last year