valflanza / accnetLinks
☆13Updated 8 years ago
Alternatives and similar repositories for accnet
Users that are interested in accnet are comparing it to the libraries listed below
Sorting:
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Calculate assocations between genes and traits☆29Updated 10 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- ☆20Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- ☆26Updated 2 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- IslandPath standalone software☆35Updated 2 years ago
- Bacterial GWAS analysis☆46Updated last week
- Extract metadata from biosamples in NCBI☆17Updated 4 years ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- ☆14Updated 2 years ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆25Updated 8 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 8 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated last year
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- ☆20Updated last year
- Bacterial taxonomy construction and evaluation in R☆15Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago