☆13Sep 4, 2017Updated 8 years ago
Alternatives and similar repositories for accnet
Users that are interested in accnet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆52Feb 2, 2021Updated 5 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 5 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples☆31Jun 22, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆38Feb 26, 2023Updated 3 years ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆124May 29, 2026Updated last month
- ☆36Apr 15, 2024Updated 2 years ago
- Archived - please see updated sccmec tool at link below☆13Aug 30, 2024Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50May 18, 2026Updated 2 months ago
- IslandPath standalone software☆38Nov 7, 2023Updated 2 years ago
- code repo for mobileOG-db☆49Nov 6, 2025Updated 8 months ago
- A nextflow pipeline for performing bacterial RNA-Seq data analysis.☆13Updated this week
- Bioinformatics tool to find integrons in bacterial genomes☆92May 7, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Mar 10, 2026Updated 4 months ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated 2 years ago
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆33Jun 17, 2024Updated 2 years ago
- Whole genome core alignments from multiple draft genomes☆13Sep 14, 2016Updated 9 years ago
- transposable element typing pipeline☆19Mar 8, 2024Updated 2 years ago
- ☆10Jun 9, 2025Updated last year
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 5 years ago
- snapper☆14Jul 8, 2024Updated 2 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆179Apr 16, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Automatically exported from code.google.com/p/qsimscan☆14Oct 10, 2021Updated 4 years ago
- Hierarchical clustering of cgMLST☆13Nov 20, 2023Updated 2 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆99Dec 9, 2025Updated 7 months ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆71Feb 23, 2026Updated 5 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆50Apr 20, 2023Updated 3 years ago
- Parallel/Homoplasic SNP Finder☆20May 3, 2023Updated 3 years ago
- Calculate fastq reads and sequencing coverage☆15Oct 20, 2020Updated 5 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆41Oct 23, 2024Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆42Feb 9, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.