valflanza / accnetLinks
☆13Updated 8 years ago
Alternatives and similar repositories for accnet
Users that are interested in accnet are comparing it to the libraries listed below
Sorting:
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆26Updated 3 years ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Bacterial GWAS analysis☆43Updated last month
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- ☆20Updated 2 years ago
- ☆26Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Population genomics from metagenomes☆12Updated last year
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- MAG Circularization Method☆32Updated 3 years ago
- Calculate assocations between genes and traits☆25Updated 6 months ago
- ☆13Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated last month
- Extract metadata from biosamples in NCBI☆16Updated 4 years ago
- IslandPath standalone software☆33Updated last year
- ☆20Updated last year
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 10 months ago
- Discover and annotate the virome☆49Updated 3 weeks ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆21Updated 9 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- MAGScoT - a MAG scoring and refinement tool☆36Updated 11 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆48Updated last week
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- KEGG Module Evaluation Tool☆31Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated last week
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago