valflanza / accnetLinks
☆13Updated 8 years ago
Alternatives and similar repositories for accnet
Users that are interested in accnet are comparing it to the libraries listed below
Sorting:
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Calculate assocations between genes and traits☆29Updated 9 months ago
- ☆26Updated 2 years ago
- ☆20Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated 3 weeks ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Bacterial GWAS analysis☆46Updated 2 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆53Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Discover and annotate the virome☆56Updated 2 months ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆24Updated 7 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆29Updated 7 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Prophage Activity Estimator☆29Updated last year
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- ☆20Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated last year
- ☆14Updated 2 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Updated 2 months ago
- Population genomics from metagenomes☆12Updated last year
- Extract metadata from biosamples in NCBI☆16Updated 4 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago