ProwlerForNanopore / ProwlerTrimmer
Trimming tool for Oxford Nanopore sequence data
☆21Updated 3 years ago
Alternatives and similar repositories for ProwlerTrimmer:
Users that are interested in ProwlerTrimmer are comparing it to the libraries listed below
- Find Unique genomic Regions☆29Updated last month
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- ☆25Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- ☆11Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- ☆26Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated last month
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- finding conserved regions in highly diverse genomes☆16Updated 6 months ago
- Remove lambda phage reads from a fastq file☆28Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- ☆43Updated 10 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 7 months ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- Gene-flank analysis tool☆27Updated 2 months ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated last year
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆31Updated 6 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆44Updated 2 months ago
- Generate unique KMERs for every contig in a FASTA file☆47Updated 2 years ago
- ☆20Updated 2 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆13Updated 4 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 6 years ago