ProwlerForNanopore / ProwlerTrimmerLinks
Trimming tool for Oxford Nanopore sequence data
☆22Updated 4 years ago
Alternatives and similar repositories for ProwlerTrimmer
Users that are interested in ProwlerTrimmer are comparing it to the libraries listed below
Sorting:
- Find Unique genomic Regions☆30Updated this week
- finding conserved regions in highly diverse genomes☆15Updated 4 months ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated this week
- ☆29Updated 4 years ago
- A versatile toolkit for k-mers with taxonomic information☆80Updated 2 months ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆29Updated 5 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 4 months ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- transposable element typing pipeline☆19Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 9 months ago
- ☆13Updated 3 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- ☆42Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆35Updated last month
- Scalable creating/updating of metagenome profiling databases☆62Updated 4 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 2 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 4 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 3 months ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago