download isfinder database
☆13Nov 9, 2018Updated 7 years ago
Alternatives and similar repositories for ISfinder_database
Users that are interested in ISfinder_database are comparing it to the libraries listed below
Sorting:
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆73Oct 6, 2020Updated 5 years ago
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 2 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- Interpretative standards for AMR genotypes☆27Updated this week
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Updated this week
- ☆10Jun 9, 2025Updated 8 months ago
- ☆11Feb 12, 2026Updated 2 weeks ago
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆24Nov 3, 2025Updated 4 months ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆105Dec 5, 2025Updated 2 months ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Jul 30, 2024Updated last year
- HAlign 4: A New Strategy for Rapidly Aligning Millions of Sequences☆16Feb 6, 2026Updated 3 weeks ago
- ☆15Feb 10, 2025Updated last year
- For distributing patric related code☆27Dec 19, 2022Updated 3 years ago
- Genomewide Epistasis Analysis on Bacteria☆15May 13, 2025Updated 9 months ago
- ☆13Sep 4, 2017Updated 8 years ago
- ☆19Nov 11, 2024Updated last year
- code repo for mobileOG-db☆46Nov 6, 2025Updated 3 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆41Apr 17, 2024Updated last year
- A Port of SparCC by Yonatan Friedman to Python3☆17Feb 14, 2020Updated 6 years ago
- ☆26Updated this week
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 4 months ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆44Aug 20, 2025Updated 6 months ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated 2 weeks ago
- Bioinformatics tool to find integrons in bacterial genomes☆85May 7, 2025Updated 9 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Oct 30, 2023Updated 2 years ago
- Calculate fastq reads and sequencing coverage☆15Oct 20, 2020Updated 5 years ago
- a collection of scripts for organising bacterial genomes by species☆81Mar 18, 2022Updated 3 years ago
- Plasmid analysis using rearrangement distances☆50Feb 19, 2026Updated last week
- Fast pairwise transmission inference from single genome and/or metagenomic data☆24Aug 1, 2025Updated 7 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆91Dec 3, 2025Updated 3 months ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated last year
- Python module for parsing, writing, aligning, and manipulating glycan structrures☆10Feb 11, 2026Updated 2 weeks ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆148Jan 9, 2026Updated last month
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆52Aug 16, 2021Updated 4 years ago
- (Meta-)genome screening for functional and natural product gene sequences☆101Feb 20, 2026Updated last week
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Oct 15, 2025Updated 4 months ago
- Fast protein domain structure embedding+search tool☆27Sep 21, 2025Updated 5 months ago