download isfinder database
☆13Nov 9, 2018Updated 7 years ago
Alternatives and similar repositories for ISfinder_database
Users that are interested in ISfinder_database are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆73Oct 6, 2020Updated 5 years ago
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆12Apr 27, 2026Updated 4 months ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆25Aug 19, 2026Updated last month
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆116Dec 5, 2025Updated 9 months ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Apr 30, 2026Updated 4 months ago
- ☆10Jun 9, 2025Updated last year
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆38Apr 24, 2025Updated last year
- A taxonomic classifier of plasmids☆29Jul 7, 2021Updated 5 years ago
- ☆20Nov 11, 2024Updated last year
- A Port of SparCC by Yonatan Friedman to Python3☆17Feb 14, 2020Updated 6 years ago
- a collection of scripts for organising bacterial genomes by species☆80Mar 18, 2022Updated 4 years ago
- Interpretative standards for AMR genotypes☆31Aug 19, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated 7 months ago
- For distributing patric related code☆28Dec 19, 2022Updated 3 years ago
- Genomewide Epistasis Analysis on Bacteria☆15Aug 7, 2026Updated last month
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆48Sep 9, 2026Updated 2 weeks ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆20Jun 30, 2026Updated 2 months ago
- HAlign 4: A New Strategy for Rapidly Aligning Millions of Sequences☆19Updated this week
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆42Apr 17, 2024Updated 2 years ago
- Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.☆15Jun 17, 2026Updated 3 months ago
- ☆13Sep 4, 2017Updated 9 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Calculate fastq reads and sequencing coverage☆15Oct 20, 2020Updated 5 years ago
- ☆16Jul 24, 2026Updated 2 months ago
- Bioinformatics tool to find integrons in bacterial genomes☆95May 7, 2025Updated last year
- VIGOR4☆24Aug 15, 2025Updated last year
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 11 months ago
- 100-Days-Of-ML-Code中文版☆15Apr 6, 2022Updated 4 years ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆184Apr 16, 2025Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆131Oct 30, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆25Jul 22, 2026Updated 2 months ago
- (Meta-)genome screening for functional and natural product gene sequences☆119Updated this week
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆37Oct 26, 2020Updated 5 years ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆268Jun 11, 2026Updated 3 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Jun 17, 2022Updated 4 years ago
- Python module for parsing, writing, aligning, and manipulating glycan structrures☆10Sep 16, 2026Updated last week
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆55Aug 16, 2021Updated 5 years ago