orangeSi / ISfinder_databaseLinks
download isfinder database
☆13Updated 7 years ago
Alternatives and similar repositories for ISfinder_database
Users that are interested in ISfinder_database are comparing it to the libraries listed below
Sorting:
- ☆25Updated last year
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Calculate assocations between genes and traits☆29Updated 10 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆20Updated 2 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆34Updated 6 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- ☆13Updated 8 years ago
- Microbial agile accurate SNP Typer☆30Updated 2 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 6 months ago
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆23Updated 3 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆23Updated 6 months ago
- Genomewide Epistasis Analysis on Bacteria☆15Updated 8 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated 2 weeks ago
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆32Updated last year
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- Bacterial GWAS analysis☆46Updated 3 weeks ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Updated 2 years ago
- ☆25Updated this week
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 9 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- ☆34Updated 2 years ago
- Discover and annotate the virome☆58Updated last week
- frame-shift correction for long-read (meta)genomics☆33Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated 2 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Updated this week
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Updated 2 weeks ago