dmnfarrell / pathogenie
Desktop tool for microbial genome annotation and gene detection
☆12Updated 3 years ago
Alternatives and similar repositories for pathogenie:
Users that are interested in pathogenie are comparing it to the libraries listed below
- Find common blocks and differences between DNA sequences☆40Updated 2 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated last year
- ☆19Updated 2 years ago
- Bacterial Annotation by Learned Representation of Genes☆54Updated 4 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆30Updated last year
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆44Updated 4 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆41Updated 3 weeks ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆21Updated 2 years ago
- Nanopore Plasmid Sequencing☆31Updated last year
- PaperBLAST: find papers about a protein or its homologs☆38Updated last week
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆30Updated 3 weeks ago
- ☆10Updated 5 months ago
- ☆121Updated 5 months ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆16Updated 2 weeks ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆18Updated last year
- User-friendly software for viewing and processing Sanger DNA sequencing trace files.☆24Updated 6 years ago
- A simple command-line tool to download data from Joint Genome Institute databases☆50Updated 2 years ago
- Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C☆14Updated this week
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆23Updated this week
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆21Updated 2 years ago
- NovelTree is a highly parallelized and computationally efficient phylogenomic workflow that infers gene families, gene family trees, spec…☆20Updated 4 months ago
- A Python module to analyze Sanger sequencing results.☆22Updated last year
- Code for detecting genomic island insertions in clades of microbes.☆19Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆81Updated 2 years ago
- ☆28Updated this week
- A high-fidelity E. coli RNA-seq compendium☆32Updated 3 years ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 2 years ago
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆56Updated 4 years ago
- A collection of documented examples using TreeTime☆20Updated 5 years ago
- Discovery of conserved gene clusters in multiple genomes☆58Updated 2 weeks ago