dmnfarrell / pathogenieLinks
Desktop tool for microbial genome annotation and gene detection
☆12Updated 4 years ago
Alternatives and similar repositories for pathogenie
Users that are interested in pathogenie are comparing it to the libraries listed below
Sorting:
- Find common blocks and differences between DNA sequences☆42Updated 4 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Nanopore Plasmid Sequencing☆33Updated last year
- Bacterial Annotation by Learned Representation of Genes☆57Updated 4 years ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆35Updated last month
- ☆20Updated 2 years ago
- Python library to visualize circular plasmid maps☆26Updated 3 years ago
- Comparative Genomics Toolkit 3☆132Updated last week
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆21Updated 4 months ago
- RNA dependent RNA Polymerase Palmprint Analysis☆11Updated last year
- Python bindings for the TaxonKit library☆41Updated last month
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 3 years ago
- PaperBLAST: find papers about a protein or its homologs☆42Updated 2 weeks ago
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆33Updated 4 months ago
- Code depository for papers☆25Updated 7 months ago
- Detection of phage RBPs based on protein domains and machine learning☆24Updated 6 months ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆22Updated 7 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆56Updated 4 months ago
- PHANOTATE: a gene caller for phages.☆78Updated 8 months ago
- A genome browser in your Jupyter notebook☆31Updated 3 months ago
- A package to annotate protein sequences☆60Updated 5 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆71Updated last month
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆83Updated 8 months ago
- Discovery of conserved gene clusters in multiple genomes☆83Updated 2 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆70Updated 3 months ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆50Updated 10 months ago
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated 2 months ago
- ☆131Updated 11 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago