dmnfarrell / pathogenieLinks
Desktop tool for microbial genome annotation and gene detection
☆12Updated 3 years ago
Alternatives and similar repositories for pathogenie
Users that are interested in pathogenie are comparing it to the libraries listed below
Sorting:
- Find common blocks and differences between DNA sequences☆42Updated 2 months ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- Nanopore Plasmid Sequencing☆32Updated last year
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- A package to annotate protein sequences☆58Updated 3 months ago
- PaperBLAST: find papers about a protein or its homologs☆39Updated 3 weeks ago
- A high-fidelity E. coli RNA-seq compendium☆32Updated 4 years ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆21Updated 2 years ago
- A Pure-Python parser of HMMER3 output☆17Updated 7 months ago
- Malleable All-seeing Journal Of Research Artifacts☆36Updated 2 years ago
- Python bindings for the TaxonKit library☆40Updated 3 weeks ago
- Super-fast and accurate demultiplexing of direct RNA-seq runs.☆13Updated this week
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Code depository for papers☆24Updated 5 months ago
- Open source short linear motif discovery and sequence analysis☆24Updated 8 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆68Updated last month
- Python toolbox for phenotype analysis of arrayed microbial colonies☆17Updated last year
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆20Updated 2 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 5 months ago
- Metagenomic search for novel CRISPR-transposons☆12Updated 3 years ago
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆59Updated 4 years ago
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆33Updated last month
- ☆25Updated last year
- Detection of phage RBPs based on protein domains and machine learning☆23Updated 4 months ago
- Detection of incorrectly labeled sequences across kingdoms☆86Updated 2 years ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated this week
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆29Updated last year
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆26Updated 5 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆36Updated last week
- Python library to visualize circular plasmid maps☆26Updated 3 years ago