Alternatives and similar repositories for pathogenie

Users that are interested in pathogenie are comparing it to the libraries listed below

• Edinburgh-Genome-Foundry / Geneblocks
  Find common blocks and differences between DNA sequences
  ☆42Updated 3 months ago
• mckennalab / Circuitseq
  Nanopore Plasmid Sequencing
  ☆34Updated 2 years ago
• dimiboeckaerts / PhageRBPdetection
  Detection of phage RBPs based on protein domains and machine learning
  ☆30Updated last year
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆63Updated 5 years ago
• Adrian-Cantu / PhANNs
  ☆21Updated 3 years ago
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆51Updated 2 weeks ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆59Updated 5 years ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆61Updated 11 months ago
• kelwyres / Bactabolize
  ☆43Updated 7 months ago
• LaboratorioBioinformatica / MARVEL
  MARVEL: Metagenomic Analyses and Retrieval of Viral ELements
  ☆51Updated last year
• Edinburgh-Genome-Foundry / crazydoc
  Read DNA sequences from colourful Microsoft Word documents
  ☆34Updated 8 months ago
• deprekate / PHANOTATE
  PHANOTATE: a gene caller for phages.
  ☆82Updated last year
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆31Updated 8 months ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆37Updated last month
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆95Updated 5 months ago
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆51Updated 3 years ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆43Updated this week
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆27Updated 2 years ago
• arvestad / alv
  A console-based alignment viewer
  ☆118Updated 7 months ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆27Updated 2 months ago
• moshi4 / phyTreeViz
  Simple phylogenetic tree visualization python package for phylogenetic analysis
  ☆64Updated last year
• qLSLab / GPRuler
  GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…
  ☆11Updated 3 years ago
• Edinburgh-Genome-Foundry / Plateo
  🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more
  ☆46Updated 8 months ago
• CAMI-challenge / AMBER
  AMBER: Assessment of Metagenome BinnERs
  ☆33Updated last month
• ThieleLab / CodeBase
  Code depository for papers
  ☆27Updated 3 months ago
• rnajena / vidhop
  VIDHOP is a virus host predicting tool. Its able to predict influenza A virus, rabies lyssavirus and rotavirus A.
  ☆23Updated 2 years ago
• KatyBrown / CIAlign
  ☆133Updated last year
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆67Updated 10 months ago
• EnzoAndree / HmmPy
  A Pure-Python parser of HMMER3 output
  ☆18Updated last year
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 4 years ago