dmnfarrell / pathogenie
Desktop tool for microbial genome annotation and gene detection
☆12Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for pathogenie
- Find common blocks and differences between DNA sequences☆40Updated 2 years ago
- Bacterial Annotation by Learned Representation of Genes☆54Updated 3 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆25Updated last year
- Nanopore Plasmid Sequencing☆30Updated last year
- A genome browser in your Jupyter notebook☆26Updated 7 months ago
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆55Updated 4 years ago
- PaperBLAST: find papers about a protein or its homologs☆35Updated last week
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆29Updated 2 weeks ago
- A Pure-Python parser of HMMER3 output☆17Updated last month
- A package to annotate protein sequences☆53Updated 4 months ago
- A high-fidelity E. coli RNA-seq compendium☆32Updated 3 years ago
- A Python module to analyze Sanger sequencing results.☆18Updated 11 months ago
- Python bindings for the TaxonKit library☆31Updated 3 months ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆20Updated 4 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆34Updated 5 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆21Updated 7 months ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆29Updated last year
- Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C☆14Updated last week
- Python library to visualize circular plasmid maps☆22Updated 2 years ago
- Making bioinformatics fun again☆60Updated 5 months ago
- Protein orthologous group assignment with deep learning☆26Updated 4 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆30Updated 2 months ago
- Biological sequence clustering tool with dynamic threshold☆23Updated last year
- ☆117Updated 2 months ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆31Updated 6 months ago
- Software for predicting translation initiation rates in bacteria☆19Updated this week
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆20Updated 2 years ago
- A collection of documented examples using TreeTime☆17Updated 5 years ago
- ☆35Updated 2 weeks ago