Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the branch 'example' or on the practical webpage:
β16Mar 25, 2022Updated 4 years ago
Alternatives and similar repositories for metagenomicspractical
Users that are interested in metagenomicspractical are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 𧬠Viral genome reference alignmentβ12Jan 26, 2021Updated 5 years ago
- Download assembly files from NCBIβ13May 9, 2023Updated 3 years ago
- Code for de novo discovery of viral families in virome dataβ16Jun 20, 2024Updated 2 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.β28Aug 24, 2022Updated 3 years ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencingβ20Jul 26, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- vaginal microbiotaβ13Jan 21, 2025Updated last year
- Analysis of RNA epitranscriptome sequencing data with affinity-based shotgun sequencing approachβ10Apr 2, 2020Updated 6 years ago
- R markdown documents copied from other folders on Dec 15th 2021β14Nov 4, 2025Updated 8 months ago
- A Nextflow full-length 16S profiling pipeline for ONT readsβ25Nov 16, 2023Updated 2 years ago
- Tutorial for Metagenomics Analysesβ10Jun 16, 2020Updated 6 years ago
- A repo with just adapter sequencesβ15Jul 7, 2025Updated last year
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeqβ11Sep 1, 2015Updated 10 years ago
- Awk, bash, python scripts for processing NGS dataβ14Nov 6, 2015Updated 10 years ago
- DDBJ Fast Annotation and Submission Toolβ87Jul 22, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologiesβ39May 25, 2023Updated 3 years ago
- Data files useful for BLUPF90 programsβ19Feb 26, 2021Updated 5 years ago
- β35Oct 6, 2025Updated 9 months ago
- HTSanalyzeR2: A R package for gene set enrichment and network analysis of various high-throughput dataβ14Dec 2, 2020Updated 5 years ago
- A tool for identifying active prophage elements through read mappingβ13Oct 9, 2023Updated 2 years ago
- β18Jun 30, 2023Updated 3 years ago
- A snakemake workflow for metagenomic projectsβ15Feb 16, 2023Updated 3 years ago
- Repository for bioinformatics training at the Norwegian Veterinary Instituteβ45May 30, 2022Updated 4 years ago
- Enhancer-Gene Prediction Pipeline based on logistic regression and ABC modelβ26Jul 14, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off β’ AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- HoCoRT - Remove specific organisms from sequencing readsβ17Jan 5, 2025Updated last year
- Reference Phylogeny for Bacterial and Archaeal Genomesβ25Aug 9, 2025Updated 11 months ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USAβ22Aug 2, 2022Updated 3 years ago
- scripts for microbiome analysisβ12Jul 25, 2024Updated 2 years ago
- β19Oct 9, 2017Updated 8 years ago
- MiGA: Microbial Genomes Atlasβ33Updated this week
- amica: an interactive and user-friendly web-based platform for the analysis of proteomics dataβ28Mar 30, 2026Updated 3 months ago
- Autometa: Automated Extraction of Genomes from Shotgun Metagenomesβ45Jan 24, 2025Updated last year
- β29Sep 28, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Secβ¦β15May 24, 2023Updated 3 years ago
- A tutorial of the BLUPF90 family programsβ28Apr 28, 2025Updated last year
- Reaction Analysis through Imaging of Chemical Unitsβ17Dec 5, 2025Updated 7 months ago
- ClusterScan, search for clusters of features in a given annotation.β12Aug 26, 2021Updated 4 years ago
- The Biosynthetic Gene cluster Metaβomics abundance Profiler (BiG-MAP). A command-line tool that is able to profile the abundance and exprβ¦β35Jan 27, 2026Updated 6 months ago
- β12Mar 17, 2023Updated 3 years ago
- An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing dataβ14Aug 16, 2018Updated 7 years ago