lauralwd / metagenomicspracticalLinks
Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the branch 'example' or on the practical webpage:
☆13Updated 3 years ago
Alternatives and similar repositories for metagenomicspractical
Users that are interested in metagenomicspractical are comparing it to the libraries listed below
Sorting:
- ☆10Updated 7 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated this week
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- Bacterial GWAS analysis☆46Updated 2 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆19Updated last year
- BEAV: Bacterial Element Annotation reVamped☆73Updated 4 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- ☆81Updated last month
- ☆18Updated 3 years ago
- ☆41Updated 4 years ago
- MAG Circularization Method☆32Updated 2 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Updated last year
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- Discover and annotate the virome☆58Updated 2 months ago
- whole genome MLST analysis☆50Updated 6 months ago
- Calculate assocations between genes and traits☆29Updated 9 months ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆59Updated last month
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆46Updated 2 weeks ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆27Updated 8 months ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 5 months ago
- Collection of scripts for bacterial genomics☆48Updated 6 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Updated last year
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆48Updated 3 weeks ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Updated 3 years ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆17Updated last month