Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the branch 'example' or on the practical webpage:
☆14Mar 25, 2022Updated 3 years ago
Alternatives and similar repositories for metagenomicspractical
Users that are interested in metagenomicspractical are comparing it to the libraries listed below
Sorting:
- Tutorial for Metagenomics Analyses☆10Jun 16, 2020Updated 5 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Aug 24, 2022Updated 3 years ago
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Download assembly files from NCBI☆13May 9, 2023Updated 2 years ago
- A repo with just adapter sequences☆15Jul 7, 2025Updated 8 months ago
- A snakemake workflow for metagenomic projects☆15Feb 16, 2023Updated 3 years ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆19Jul 26, 2024Updated last year
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Aug 2, 2022Updated 3 years ago
- A Nextflow full-length 16S profiling pipeline for ONT reads☆25Nov 16, 2023Updated 2 years ago
- Microbial Whole Genome Sequence data analysis labs for 2014☆29Jul 31, 2020Updated 5 years ago
- ☆28Sep 28, 2024Updated last year
- Metagenome analysis using the Kraken software suite☆36Sep 29, 2022Updated 3 years ago
- A tool for domain based annotation with databases from the Conserved Domains Database☆30Sep 20, 2024Updated last year
- ☆10May 14, 2025Updated 9 months ago
- ☆34Oct 6, 2025Updated 5 months ago
- ☆32Jan 27, 2026Updated last month
- MiGA: Microbial Genomes Atlas☆32Feb 10, 2026Updated 3 weeks ago
- Week 3 of the OSU CoMS Webinar: Introduction to Amplicon Sequencing (QIIME, DADA2, mothur) and Ecological Statistics☆10May 28, 2023Updated 2 years ago
- Ressources for Boinformatics Trainings☆12Nov 20, 2023Updated 2 years ago
- Learning the basics of reading and writing files in Python.☆10Mar 16, 2021Updated 4 years ago
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 3 months ago
- ☆10Jan 20, 2022Updated 4 years ago
- Programming for Biology 2019☆41Oct 3, 2022Updated 3 years ago
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)☆13Jun 28, 2023Updated 2 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆91May 3, 2025Updated 10 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆34Dec 4, 2025Updated 3 months ago
- Repository for bioinformatics training at the Norwegian Veterinary Institute☆43May 30, 2022Updated 3 years ago
- Command line utility for working with next-generation sequencing files.☆38Jun 24, 2025Updated 8 months ago
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies☆38May 25, 2023Updated 2 years ago
- Deep learning methods for feature selection in gene expression autism data.☆37Jun 21, 2022Updated 3 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Feb 17, 2023Updated 3 years ago
- DDBJ Fast Annotation and Submission Tool☆84Feb 4, 2026Updated last month
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆10Jan 6, 2023Updated 3 years ago
- Draw pan- and core-genome curves from proteinortho output☆10Oct 26, 2023Updated 2 years ago
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 4 years ago
- ☆13Dec 3, 2024Updated last year
- GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.☆11Mar 22, 2024Updated last year
- ☆10Jan 19, 2019Updated 7 years ago
- ☆13May 31, 2025Updated 9 months ago