Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the branch 'example' or on the practical webpage:
☆14Mar 25, 2022Updated 4 years ago
Alternatives and similar repositories for metagenomicspractical
Users that are interested in metagenomicspractical are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Download assembly files from NCBI☆13May 9, 2023Updated 2 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Aug 24, 2022Updated 3 years ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆20Jul 26, 2024Updated last year
- Analysis of RNA epitranscriptome sequencing data with affinity-based shotgun sequencing approach☆10Apr 2, 2020Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated 4 months ago
- vaginal microbiota☆13Jan 21, 2025Updated last year
- Tutorial for Metagenomics Analyses☆10Jun 16, 2020Updated 5 years ago
- A repo with just adapter sequences☆15Jul 7, 2025Updated 8 months ago
- A Nextflow full-length 16S profiling pipeline for ONT reads☆25Nov 16, 2023Updated 2 years ago
- DDBJ Fast Annotation and Submission Tool☆84Updated this week
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq☆11Sep 1, 2015Updated 10 years ago
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies☆38May 25, 2023Updated 2 years ago
- Data files useful for BLUPF90 programs☆19Feb 26, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A tool for identifying active prophage elements through read mapping☆13Oct 9, 2023Updated 2 years ago
- HTSanalyzeR2: A R package for gene set enrichment and network analysis of various high-throughput data☆14Dec 2, 2020Updated 5 years ago
- A snakemake workflow for metagenomic projects☆15Feb 16, 2023Updated 3 years ago
- ☆34Oct 6, 2025Updated 5 months ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆108Dec 11, 2023Updated 2 years ago
- Repository for bioinformatics training at the Norwegian Veterinary Institute☆44May 30, 2022Updated 3 years ago
- ☆18Jun 30, 2023Updated 2 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Jan 5, 2025Updated last year
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Aug 2, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- scripts for microbiome analysis☆12Jul 25, 2024Updated last year
- ☆19Oct 9, 2017Updated 8 years ago
- Discover and annotate the virome☆59Feb 11, 2026Updated last month
- BuscoPhylo : Easy Busco-based phylogenomic analysis tool☆11Jul 3, 2025Updated 8 months ago
- amica: an interactive and user-friendly web-based platform for the analysis of proteomics data☆27Apr 3, 2025Updated 11 months ago
- Autometa: Automated Extraction of Genomes from Shotgun Metagenomes☆45Jan 24, 2025Updated last year
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Aug 9, 2025Updated 7 months ago
- MiGA: Microbial Genomes Atlas☆32Mar 19, 2026Updated last week
- ☆28Sep 28, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆12Mar 17, 2023Updated 3 years ago
- ClusterScan, search for clusters of features in a given annotation.☆11Aug 26, 2021Updated 4 years ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15May 24, 2023Updated 2 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated 2 years ago
- Reaction Analysis through Imaging of Chemical Units☆16Dec 5, 2025Updated 3 months ago
- ☆32Jan 27, 2026Updated 2 months ago
- Microbial Whole Genome Sequence data analysis labs for 2014☆29Jul 31, 2020Updated 5 years ago