☆11Aug 4, 2026Updated 3 months ago
Alternatives and similar repositories for enterotypes
Users that are interested in enterotypes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Updated this week
- R package to predict microbial loads☆21Updated this week
- Project aimed at training a deep learning model using Convolutional Neural Networks (CNN) for high-accuracy (over 99%) blood cancer detec…☆11Apr 2, 2024Updated 2 years ago
- This is the supplementary code for CRC-multi-kingdom☆17Nov 8, 2021Updated 4 years ago
- An R package for visualizing confounder control in meta-analyses☆11Jan 17, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆18Nov 19, 2022Updated 3 years ago
- Recording personal workflows used in work, study notes, and summaries of various tools and methods.☆11Oct 9, 2025Updated last year
- Pipelines used in the lab.☆16Mar 26, 2025Updated last year
- ☆18Feb 3, 2023Updated 3 years ago
- ☆15Sep 15, 2022Updated 4 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆38Jun 24, 2021Updated 5 years ago
- Post-processing peptide de novo sequences to improve their accuracy☆10Nov 29, 2022Updated 3 years ago
- BiomeNED main code☆12Jul 25, 2019Updated 7 years ago
- A taxonomic classifier for shotgun metagenomics reads☆10Aug 26, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Feb 22, 2022Updated 4 years ago
- ProteoStorm: An Ultrafast Metaproteomics Database Search Framework☆11Jul 15, 2023Updated 3 years ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆32Jun 10, 2020Updated 6 years ago
- Investigating the gut virus communities associated with colon cancer.☆11Sep 20, 2020Updated 6 years ago
- Create an optimal diet from USDA's food composition database using linear programming.☆11Apr 19, 2023Updated 3 years ago
- ☆12Mar 10, 2024Updated 2 years ago
- This project consists of three parts: Random forest model for GC diagnosis and Predict the survival outcomes of GC patient using RSF meth…☆32Nov 15, 2024Updated last year
- ☆20Jun 14, 2024Updated 2 years ago
- A manually curated database of human gut metabolic modules.☆19Oct 26, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Pangenome Analysis in Prokaryotes Lesson☆13Aug 20, 2024Updated 2 years ago
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- A pipeline for primary analysis of shotgun metagenomic sequencing data☆11Jun 10, 2019Updated 7 years ago
- python based queries for the proteomesoflife neo4j network database☆14Jun 17, 2020Updated 6 years ago
- ☆16Jun 21, 2023Updated 3 years ago
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆15Nov 26, 2023Updated 2 years ago
- The NFDI4Microbiota Knowledge Base, for visualizing dev branch: https://kb-dev.nfdi4microbiota.de☆28Oct 16, 2026Updated 3 weeks ago
- DL model to predict HLA peptide presentation☆17Jan 31, 2024Updated 2 years ago
- An interactive radial tree for functional hierarchies and omics data visualization☆25Mar 27, 2026Updated 7 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆28Oct 5, 2018Updated 8 years ago
- Bacterial Operon Finder for Functional Organization☆16Nov 14, 2023Updated 2 years ago
- This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedica…☆12Aug 25, 2023Updated 3 years ago
- ☆10Jun 9, 2020Updated 6 years ago
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Oct 7, 2026Updated 3 weeks ago
- ☆12Feb 10, 2023Updated 3 years ago
- Nested sampling packagin for BEAST☆12Aug 12, 2026Updated 2 months ago