greengirl / NCBIminerLinks
☆13Updated 6 years ago
Alternatives and similar repositories for NCBIminer
Users that are interested in NCBIminer are comparing it to the libraries listed below
Sorting:
- Visualization tool for genetic reassortment☆21Updated 2 months ago
- ☆23Updated 6 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Updated 8 years ago
- ggtree version of plotTree.R☆18Updated 6 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated 2 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Documentation for Evolview☆28Updated 3 years ago
- Assign taxonomy with blast, can be used for qiime☆23Updated 3 months ago
- Workshop materials for shotgun metagenomics☆36Updated 7 years ago
- ☆25Updated 3 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago
- Get the consensus sequences from SAM (and BAM) files, ignoring the reference☆11Updated 5 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Rarefaction scripts☆17Updated last year
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- ☆22Updated 5 years ago
- Microbiome Classifier Pipeline for Pacific Biosciences 16s Data☆11Updated last year
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Updated 2 years ago
- Scalable relaxed clock phylogenetic dating☆25Updated last year
- ☆41Updated last month
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆9Updated 10 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 4 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆37Updated last year
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago