greengirl / NCBIminerLinks
☆13Updated 6 years ago
Alternatives and similar repositories for NCBIminer
Users that are interested in NCBIminer are comparing it to the libraries listed below
Sorting:
- ☆41Updated 7 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Scripts for stat and plot figures in rice microbiome paper☆31Updated 10 months ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago
- Microbiome Classifier Pipeline for Pacific Biosciences 16s Data☆11Updated last year
- ggtree version of plotTree.R☆18Updated 6 years ago
- ☆23Updated 7 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- ☆28Updated last year
- Workshop materials for shotgun metagenomics☆36Updated 8 years ago
- ☆12Updated 3 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 4 months ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆32Updated 6 years ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- Visualization tool for genetic reassortment☆21Updated 4 months ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- ☆24Updated 5 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- Transform files to the microtable object with microeco package☆27Updated 3 weeks ago
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Updated 2 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆38Updated last year
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Updated 8 years ago
- Scripts and data for Duran & Thiergart et al. Cell, 2018☆24Updated 6 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- Repository containing scripts and files for 16S gene community analysis chapter in Methods in Molecular Biology☆26Updated 6 years ago