greengirl / NCBIminer
☆13Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for NCBIminer
- ggtree version of plotTree.R☆17Updated 6 years ago
- Visualization tool for genetic reassortment☆21Updated 3 weeks ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆29Updated last year
- ☆23Updated 10 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆31Updated 4 years ago
- Microbiome Classifier Pipeline for Pacific Biosciences 16s Data☆11Updated 10 months ago
- ☆23Updated 6 years ago
- Workshop materials for shotgun metagenomics☆36Updated 7 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Documentation for Evolview☆26Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated last year
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Updated 7 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆29Updated last year
- Tools for extracting individual genomes from metagenomes☆17Updated 11 months ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 3 weeks ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆19Updated 7 years ago
- Data and scripts used in the oneKP capstone analyses☆12Updated 2 years ago
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Updated last year
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- Repo for a Microbiome Protocol☆9Updated 6 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- ☆24Updated 3 years ago
- Get the consensus sequences from SAM (and BAM) files, ignoring the reference☆10Updated 5 years ago
- Rarefaction scripts☆17Updated 11 months ago
- ☆21Updated 5 years ago
- ☆21Updated 4 years ago
- Metagenomics workshop at Scripps Institute of Oceanography☆8Updated 8 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 7 months ago