Lagkouvardos / RheaLinks
A set of R scripts for the analysis of microbial profiles
☆41Updated last year
Alternatives and similar repositories for Rhea
Users that are interested in Rhea are comparing it to the libraries listed below
Sorting:
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 5 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 3 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 5 months ago
- Genome wide orthology inference and dNdS estimation☆96Updated 3 months ago
- Tools for visualising microbial community amplicon data☆70Updated last month
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 6 months ago
- ☆42Updated 8 years ago
- ☆23Updated 7 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated 2 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated 2 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated last week
- A visualization tool for exploratory data analysis of metagenomic data☆37Updated 3 years ago
- Metagenomics Workshop☆28Updated 9 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆32Updated 7 months ago
- ☆79Updated 2 years ago
- functions to analyse sanger sequencing reads in R☆104Updated last month
- functions for analyzing phyloseq data☆28Updated 10 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- A microbiome analysis toolkit for R☆25Updated 2 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago