A set of R scripts for the analysis of microbial profiles
☆42Jan 9, 2026Updated 5 months ago
Alternatives and similar repositories for Rhea
Users that are interested in Rhea are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆11Jul 13, 2018Updated 7 years ago
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- ☆11Apr 17, 2025Updated last year
- Example code from metagenomics book (https://www.gitbook.com/book/kyclark/metagenomics/details)☆18Feb 1, 2019Updated 7 years ago
- Perform microbiome-wide association studies with a variety of models☆18Feb 14, 2017Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- Metagenomics calibration R package☆20Feb 15, 2022Updated 4 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆32Aug 22, 2023Updated 2 years ago
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated 2 years ago
- An unfinished interactive Awk tutorial using Jupyter notebooks☆21Jan 27, 2016Updated 10 years ago
- Tools for visualising microbial community amplicon data☆73Nov 3, 2025Updated 8 months ago
- ☆36Nov 11, 2022Updated 3 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Feb 2, 2017Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Microbiota Analysis in R Easily☆12Jul 14, 2022Updated 3 years ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- Prophage Activity Estimator☆33May 30, 2024Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Nov 23, 2022Updated 3 years ago
- EnDED is a program that aims to detect environmentally-driven ("indirect") edges in an association network.☆10Dec 1, 2023Updated 2 years ago
- Model-based Integration of Metabolite Observations and Species Abundances☆26Feb 21, 2020Updated 6 years ago
- A Shotgun Metagenome Annotation Pipeline☆24Mar 24, 2017Updated 9 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- ☆82Dec 4, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆118Apr 11, 2023Updated 3 years ago
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 4 years ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆28May 15, 2026Updated last month
- ☆28Feb 27, 2024Updated 2 years ago
- A Better Sequencing Simulator for Metagenomics☆20May 8, 2020Updated 6 years ago
- ☆18Feb 19, 2021Updated 5 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 7 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆18Apr 4, 2026Updated 3 months ago
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆14Jun 9, 2026Updated 3 weeks ago
- Code for the Design menu in Radiant☆12May 15, 2024Updated 2 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Mar 26, 2021Updated 5 years ago
- Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach☆12Mar 21, 2024Updated 2 years ago
- A curated database of completed assemblies with taxonomy IDs☆53Jun 7, 2026Updated 3 weeks ago
- selbal: selection of balances for microbial signatures☆32Feb 24, 2025Updated last year
- Course material for the metagenomics course☆47Mar 2, 2022Updated 4 years ago