Lagkouvardos / RheaLinks
A set of R scripts for the analysis of microbial profiles
☆41Updated last year
Alternatives and similar repositories for Rhea
Users that are interested in Rhea are comparing it to the libraries listed below
Sorting:
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Speedy versions of phyloseq functions☆47Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last week
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated last month
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 6 months ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Tools for visualising microbial community amplicon data☆67Updated 2 months ago
- ☆55Updated last month
- functions for analyzing phyloseq data☆28Updated 4 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆60Updated 9 months ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆26Updated 2 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year
- ☆23Updated 6 years ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- ☆12Updated 3 years ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆48Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- ☆17Updated 2 years ago
- Transform files to the microtable object with microeco package☆27Updated 2 months ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆31Updated 11 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 7 months ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 3 months ago
- Metagenomics Workshop☆28Updated 8 years ago