tobc / dartminhash
DartMinHash: Fast Sketching for Weighted Sets
☆13Updated 4 years ago
Alternatives and similar repositories for dartminhash:
Users that are interested in dartminhash are comparing it to the libraries listed below
- ☆20Updated 4 years ago
- ProbMinHash – A Class of Locality-Sensitive Hash Algorithms for the (Probability) Jaccard Similarity☆42Updated 4 years ago
- BagMinHash - Minwise Hashing Algorithm for Weighted Sets☆26Updated 4 years ago
- ☆10Updated 2 years ago
- ☆18Updated 6 years ago
- Implementation of a Backpack Quotient Filter☆11Updated 8 months ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12Updated 11 years ago
- ☆13Updated 5 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 2 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 5 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- ☆12Updated last year
- Wavelet tree based on a fixed block boosting technique☆16Updated 3 years ago
- Simple and fast MinHash implementation in C with Python wrapper☆13Updated 4 years ago
- vector illustrations of BWT based searching on small strings☆16Updated 5 years ago
- Fast and cache-efficient full-text pangenome index☆27Updated 3 weeks ago
- ☆10Updated 4 years ago
- Relative data structures based on the BWT☆12Updated 6 years ago
- Practical Dynamic de Bruijn Graphs☆18Updated 4 years ago
- External memory suffix array construction using inducing☆10Updated 4 years ago
- ☆25Updated 4 years ago
- SetSketch: Filling the Gap between MinHash and HyperLogLog☆49Updated 3 years ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆13Updated last week
- compressed, queryable variation graphs☆11Updated 9 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Updated 2 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated 10 months ago
- Code accompanying the publication for compressed graph annotation☆13Updated 6 years ago
- Fast and accurate set similarity estimation via containment min hash☆42Updated 9 months ago
- Optimal distance lower bound k-mer sampling.☆12Updated 10 months ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year