oertl / probminhashLinks
ProbMinHash – A Class of Locality-Sensitive Hash Algorithms for the (Probability) Jaccard Similarity
☆44Updated 4 years ago
Alternatives and similar repositories for probminhash
Users that are interested in probminhash are comparing it to the libraries listed below
Sorting:
- DartMinHash: Fast Sketching for Weighted Sets☆12Updated 4 years ago
- SetSketch: Filling the Gap between MinHash and HyperLogLog☆48Updated 4 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆83Updated last year
- BagMinHash - Minwise Hashing Algorithm for Weighted Sets☆26Updated 5 years ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆89Updated last week
- An optimal space run-length Burrows-Wheeler transform full-text index☆66Updated 2 years ago
- Wavelet tree based on a fixed block boosting technique☆16Updated 4 years ago
- Implementation of a Backpack Quotient Filter☆12Updated 2 months ago
- ☆20Updated 5 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Updated 2 months ago
- FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…☆107Updated 10 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year
- Simple and fast MinHash implementation in C with Python wrapper☆13Updated last month
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆30Updated 3 months ago
- ☆10Updated 3 years ago
- Fast and cache-efficient full-text pangenome index☆29Updated this week
- dynamic-updateable-index☆11Updated 9 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Updated 7 years ago
- FM-index representation of a de Bruijn graph☆27Updated 8 years ago
- LogLog space version of MinHash by combining ideas from HyperLogLog and b-bit MinHash☆56Updated 5 years ago
- Ultra fast MSD radix sorter☆11Updated 5 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆26Updated 3 years ago
- Efficient construction of the BWT using string compression☆20Updated 3 months ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆82Updated last year
- ☆10Updated last year
- ☆14Updated 5 years ago
- Performs memory-efficient reservoir sampling on very large input files delimited by newlines☆69Updated 5 years ago
- An experimental tool to find approximate max-cuts in a large graph☆10Updated 4 years ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆34Updated 9 months ago