Alternatives and similar repositories for ntHash:

Users that are interested in ntHash are comparing it to the libraries listed below

• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆78Updated last year
• GFA-spec / GFA-spec
  Graphical Fragment Assembly (GFA) Format Specification
  ☆206Updated 7 months ago
• ekg / seqwish
  alignment to variation graph inducer
  ☆147Updated last month
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆223Updated 7 months ago
• waveygang / wfmash
  base-accurate DNA sequence alignments using WFA and mashmap3
  ☆186Updated this week
• yangao07 / abPOA
  abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
  ☆119Updated last week
• lh3 / minimap
  This repo is DEPRECATED. Please use minimap2, the successor of minimap.
  ☆105Updated 7 years ago
• vibansal / HapCUT2
  software tools for haplotype assembly from sequence data
  ☆217Updated last month
• thegenemyers / FASTK
  A fast K-mer counter for high-fidelity shotgun datasets
  ☆124Updated last month
• ChaissonLab / LRA
  Long read aligner
  ☆115Updated last year
• marbl / MashMap
  A fast approximate aligner for long DNA sequences
  ☆280Updated 5 months ago
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated last month
• marbl / Winnowmap
  Long read / genome alignment software
  ☆281Updated 4 months ago
• pmelsted / bifrost
  Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
  ☆209Updated 11 months ago
• walaj / SeqLib
  C++ htslib/bwa-mem/fermi interface for interrogating sequence data
  ☆137Updated 7 months ago
• mcveanlab / mccortex
  De novo genome assembly and multisample variant calling
  ☆112Updated 6 years ago
• ksahlin / strobealign
  Aligns short reads using dynamic seed size with strobemers
  ☆165Updated this week
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆204Updated 2 years ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆147Updated 3 years ago
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆134Updated 4 years ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆144Updated last month
• Illumina / paragraph
  Graph realignment tools for structural variants
  ☆156Updated 2 years ago
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆228Updated last year
• rvaser / spoa
  SIMD partial order alignment tool/library
  ☆166Updated last year
• bcgsc / arcs
  🌈Scaffold genome sequence assemblies using linked or long read sequencing data
  ☆93Updated 4 months ago
• human-pangenomics / hpp_pangenome_resources
  ☆108Updated last year
• refresh-bio / agc
  Assembled Genomes Compressor
  ☆160Updated 4 months ago
• VGP / vgp-assembly
  VGP repository for the genome assembly working group
  ☆190Updated last year
• tfwillems / HipSTR
  Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
  ☆95Updated 2 years ago
• lh3 / readfq
  Fast multi-line FASTA/Q reader in several programming languages
  ☆175Updated 3 years ago