Alternatives and similar repositories for ntHash

Users that are interested in ntHash are comparing it to the libraries listed below

• COMBINE-lab / pufferfish
  An efficient index for the colored, compacted, de Bruijn graph
  ☆111Updated last year
• yangao07 / abPOA
  abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
  ☆134Updated 3 months ago
• ocxtal / libgaba
  Adaptive semi-global banded alignment on string graphs
  ☆66Updated 7 years ago
• GATB / gatb-core
  Core library of the Genome Analysis Toolbox with de-Bruijn graph
  ☆65Updated last year
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆77Updated 2 years ago
• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆79Updated last year
• pangenome / seqwish
  alignment to variation graph inducer
  ☆156Updated 2 weeks ago
• COMBINE-lab / cuttlefish
  Building the compacted de Bruijn graph efficiently from references or reads.
  ☆92Updated last week
• rob-p / FQFeeder
  Self-contained, multi-threaded fasta/q parser
  ☆48Updated last week
• lh3 / ropebwt3
  BWT construction and search
  ☆126Updated 3 weeks ago
• jltsiren / gbwt
  Substring index for paths in a graph
  ☆60Updated this week
• bcgsc / biobloom
  Create Bloom filters for a given reference and then use it to categorize sequences
  ☆76Updated last year
• GATB / bcalm
  compacted de Bruijn graph construction in low memory
  ☆100Updated 3 months ago
• refresh-bio / agc
  Assembled Genomes Compressor
  ☆176Updated last year
• mcveanlab / mccortex
  De novo genome assembly and multisample variant calling
  ☆112Updated 6 years ago
• thegenemyers / DALIGNER
  Find all significant local alignments between reads
  ☆141Updated last year
• human-pangenomics / hpp_pangenome_resources
  ☆126Updated 2 years ago
• thegenemyers / FASTK
  A fast K-mer counter for high-fidelity shotgun datasets
  ☆140Updated 2 weeks ago
• rvaser / spoa
  SIMD partial order alignment tool/library
  ☆171Updated 4 months ago
• lh3 / ksw2
  Global alignment and alignment extension
  ☆142Updated 2 years ago
• jltsiren / gcsa2
  BWT-based index for graphs
  ☆73Updated 10 months ago
• natir / yacrd
  Yet Another Chimeric Read Detector
  ☆84Updated last year
• KirillKryukov / naf
  Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
  ☆63Updated 6 months ago
• ocxtal / minialign
  [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…
  ☆125Updated 7 years ago
• walaj / SeqLib
  C++ htslib/bwa-mem/fermi interface for interrogating sequence data
  ☆138Updated 4 months ago
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆86Updated 11 months ago
• ChaissonLab / LRA
  Long read aligner
  ☆114Updated 2 years ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆84Updated 4 months ago
• smarco / WFA-paper
  Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment
  ☆199Updated 3 years ago
• yukiteruono / pbsim2
  PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
  ☆74Updated 2 years ago