bcgsc / ntHashLinks
Fast hash function for DNA/RNA sequences
☆103Updated last year
Alternatives and similar repositories for ntHash
Users that are interested in ntHash are comparing it to the libraries listed below
Sorting:
- A repository for generating strobemers and evalaution☆79Updated last year
- An efficient index for the colored, compacted, de Bruijn graph☆111Updated 10 months ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆126Updated 3 weeks ago
- Core library of the Genome Analysis Toolbox with de-Bruijn graph☆63Updated 6 months ago
- Adaptive semi-global banded alignment on string graphs☆67Updated 7 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆90Updated 3 months ago
- A fast K-mer counter for high-fidelity shotgun datasets☆131Updated 2 months ago
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- alignment to variation graph inducer☆150Updated last month
- BWT construction and search☆117Updated 3 weeks ago
- compacted de Bruijn graph construction in low memory☆100Updated 10 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 4 years ago
- MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities☆96Updated 3 years ago
- Substring index for paths in a graph☆60Updated 3 months ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆65Updated last year
- Assembled Genomes Compressor☆168Updated 8 months ago
- Genome inference from a population reference graph☆97Updated 4 months ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated 2 weeks ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- ☆117Updated last year
- Yet Another Chimeric Read Detector☆80Updated 9 months ago
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆125Updated 6 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆102Updated 10 months ago
- Long read aligner☆115Updated 2 years ago
- Find all significant local alignments between reads☆142Updated last year
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 5 months ago
- Implementation of Positional Burrows-Wheeler Transform for genetic data☆110Updated 4 months ago
- A complete diploid human genome☆124Updated last week
- Aligns short reads using dynamic seed size with strobemers☆175Updated this week
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year