bcgsc / ntHashLinks
Fast hash function for DNA/RNA sequences
☆104Updated last year
Alternatives and similar repositories for ntHash
Users that are interested in ntHash are comparing it to the libraries listed below
Sorting:
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆129Updated last week
- A repository for generating strobemers and evalaution☆79Updated last year
- Core library of the Genome Analysis Toolbox with de-Bruijn graph☆64Updated 8 months ago
- An efficient index for the colored, compacted, de Bruijn graph☆109Updated last year
- Long read aligner☆115Updated 2 years ago
- alignment to variation graph inducer☆149Updated last week
- Adaptive semi-global banded alignment on string graphs☆67Updated 7 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- compacted de Bruijn graph construction in low memory☆99Updated last year
- BWT construction and search☆120Updated last week
- A fast K-mer counter for high-fidelity shotgun datasets☆131Updated last month
- Building the compacted de Bruijn graph efficiently from references or reads.☆89Updated 5 months ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆73Updated 2 years ago
- Assembled Genomes Compressor☆169Updated 10 months ago
- ☆120Updated 2 years ago
- Yet Another Chimeric Read Detector☆81Updated 11 months ago
- Find all significant local alignments between reads☆141Updated last year
- MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities☆98Updated 3 years ago
- BWT-based index for graphs☆73Updated 7 months ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 6 months ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆66Updated last year
- Aligns short reads using dynamic seed size with strobemers☆180Updated this week
- Hybrid error correction of long reads using colored de Bruijn graphs☆105Updated last month
- Substring index for paths in a graph☆60Updated 6 months ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆94Updated 5 months ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Updated 5 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 3 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- Data from the Human PanGenomics Project☆61Updated 4 years ago