bcgsc / ntHashLinks
Fast hash function for DNA/RNA sequences
☆104Updated last year
Alternatives and similar repositories for ntHash
Users that are interested in ntHash are comparing it to the libraries listed below
Sorting:
- An efficient index for the colored, compacted, de Bruijn graph☆110Updated last year
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆134Updated last month
- Core library of the Genome Analysis Toolbox with de-Bruijn graph☆65Updated 10 months ago
- A repository for generating strobemers and evalaution☆79Updated last year
- Building the compacted de Bruijn graph efficiently from references or reads.☆90Updated 7 months ago
- alignment to variation graph inducer☆152Updated this week
- Adaptive semi-global banded alignment on string graphs☆67Updated 7 years ago
- SIMD partial order alignment tool/library☆170Updated 2 months ago
- Estimating k-mer coverage histogram of genomics data☆76Updated 2 years ago
- BWT construction and search☆122Updated this week
- A fast K-mer counter for high-fidelity shotgun datasets☆135Updated 3 months ago
- Aligns short reads using dynamic seed size with strobemers☆185Updated this week
- Long read aligner☆115Updated 2 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆69Updated 3 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Substring index for paths in a graph☆60Updated last week
- Yet Another Chimeric Read Detector☆81Updated last year
- This is an updated mirror of the original PacBio Read Simulator☆38Updated 7 years ago
- Find all significant local alignments between reads☆141Updated last year
- ☆126Updated 2 years ago
- compacted de Bruijn graph construction in low memory☆100Updated last month
- Genome inference from a population reference graph☆96Updated 8 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆68Updated last year
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 3 months ago
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆125Updated 7 years ago
- Implementation of Positional Burrows-Wheeler Transform for genetic data☆112Updated 3 weeks ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆96Updated 6 months ago
- Data from the Human PanGenomics Project☆61Updated 4 years ago
- Self-contained, multi-threaded fasta/q parser☆48Updated last year