bcgsc / ntHash
Fast hash function for DNA/RNA sequences
☆98Updated 10 months ago
Alternatives and similar repositories for ntHash:
Users that are interested in ntHash are comparing it to the libraries listed below
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- alignment to variation graph inducer☆145Updated last week
- Substring index for paths in a graph☆59Updated 2 weeks ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆119Updated last week
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆218Updated 6 months ago
- An efficient index for the colored, compacted, de Bruijn graph☆107Updated 4 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆182Updated this week
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆92Updated 3 months ago
- ☆108Updated this week
- PGR-TK: Pangenome Research Tool Kit☆98Updated 10 months ago
- Graph realignment tools for structural variants☆156Updated 2 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆141Updated last week
- modular k-mer count matrix and Bloom filter construction for large read collections☆81Updated 4 months ago
- ☆104Updated last year
- Genome inference from a population reference graph☆95Updated 2 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 3 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆128Updated 3 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆67Updated 2 years ago
- A fast K-mer counter for high-fidelity shotgun datasets☆123Updated last week
- A repository for generating strobemers and evalaution☆77Updated 10 months ago
- De novo genome assembly and multisample variant calling☆113Updated 5 years ago
- Adaptive semi-global banded alignment on string graphs☆65Updated 6 years ago
- A fast approximate aligner for long DNA sequences☆279Updated 4 months ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated last year
- Graphical Fragment Assembly (GFA) Format Specification☆205Updated 6 months ago
- Aligns short reads using dynamic seed size with strobemers☆164Updated 2 weeks ago
- Long read aligner☆115Updated last year
- An accurate and ultra-fast hybrid genome assembler☆83Updated 10 months ago
- Yet Another Chimeric Read Detector☆75Updated 3 months ago
- Assembled Genomes Compressor☆159Updated 2 months ago