petersaj / AP_histologyLinks
Histology processing
☆71Updated last week
Alternatives and similar repositories for AP_histology
Users that are interested in AP_histology are comparing it to the libraries listed below
Sorting:
- ☆52Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆79Updated 8 months ago
- Tools to work with Allen Inst CCF data in matlab☆143Updated 5 months ago
- pyqt5 dependent applications for IBL sessions☆32Updated 2 months ago
- Registration of cells across sessions.☆75Updated last year
- A curated list of awesome Neuropixels resources.☆121Updated 2 weeks ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆138Updated 2 weeks ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- SpikeGLX postprocessing [tshift filter CAR fix join extract]☆12Updated last month
- Python package to handle probe layout, geometry and wiring to device.☆76Updated last week
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆64Updated last month
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated last month
- SpikeGLX recording system GUI [Neuropixels NI]☆100Updated this week
- Collection of probe description for probeinterface☆17Updated this week
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆73Updated last week
- Package for automatic post-processing and merging of multiple spike-sorting analyses.☆28Updated last week
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆30Updated 3 weeks ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- cortex lab code for electrophysiology☆85Updated last year
- Utilities for managing Neuropixel datasets and Kilosort results☆48Updated 7 months ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- "Approaches to Study Neural Circuits" course☆65Updated last year
- UnitRefine is a machine-learning toolbox that simplifies spike sorting curation by reducing manual curation.☆64Updated last week
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…