Histology processing
☆77Jun 3, 2026Updated 2 weeks ago
Alternatives and similar repositories for AP_histology
Users that are interested in AP_histology are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools to work with Allen Inst CCF data in matlab☆151Jul 15, 2025Updated 11 months ago
- 3-D imaging visualisation through slicing☆31Jan 14, 2025Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆82Jun 3, 2026Updated 2 weeks ago
- SpikeGLX postprocessing [tshift filter CAR fix join extract]☆16May 5, 2026Updated last month
- pyqt5 dependent applications for IBL sessions☆35Jan 27, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆16Oct 26, 2022Updated 3 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28May 22, 2022Updated 4 years ago
- A curated list of awesome Neuropixels resources.☆140Dec 16, 2025Updated 6 months ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆151Apr 10, 2026Updated 2 months ago
- Automated 3D cell detection in very large images☆227Jun 11, 2026Updated last week
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆70Apr 22, 2026Updated last month
- UCLA Multiphoton Miniature Microscope☆17May 19, 2025Updated last year
- ☆56Aug 30, 2024Updated last year
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆195Jan 26, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆34Dec 5, 2025Updated 6 months ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Oct 22, 2024Updated last year
- cortex lab code for electrophysiology☆84Feb 5, 2024Updated 2 years ago
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆46Mar 18, 2025Updated last year
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆93Jul 16, 2021Updated 4 years ago
- Brain flatmaps generation☆11Oct 5, 2022Updated 3 years ago
- phy: interactive visualization and manual spike sorting of large-scale ephys data☆420May 9, 2026Updated last month
- Python package to handle probe layout, geometry and wiring to device.☆80Jun 11, 2026Updated last week
- Automated 3D brain registration with support for multiple species and atlases.☆149Jun 2, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- IBL core shared libraries☆68Updated this week
- A multi-species, multi-ephys format histology processing and probe alignment pipeline☆13Mar 20, 2024Updated 2 years ago
- An open list of tools & resources for 'spikes': recordings of single-unit neural activity (action potentials).☆34Aug 19, 2022Updated 3 years ago
- Fast spike sorting with drift correction☆619Apr 27, 2026Updated last month
- Image processing and tools for widefield imaging☆20Dec 7, 2019Updated 6 years ago
- A Python package to visualise neuroanatomical data in atlas space☆655Jun 12, 2026Updated last week
- Plugins for Phy2☆20May 13, 2025Updated last year
- Information about Neuropixels electrode arrays☆97Dec 15, 2024Updated last year
- ☆35Jun 5, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Python interface to access neuroanatomical atlases☆180Updated this week
- ☆15Jun 25, 2021Updated 4 years ago
- Utilities for managing Neuropixel datasets and Kilosort results☆47May 13, 2025Updated last year
- Motion estimation and registration of Neuropixels data☆14Aug 2, 2021Updated 4 years ago
- Pre-processing pipeline for widefield data☆13Dec 11, 2020Updated 5 years ago
- Code accompanying Steinmetz et al., 2019☆63Aug 9, 2021Updated 4 years ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆126Aug 18, 2024Updated last year