petersaj / AP_histology
Histology processing
☆65Updated this week
Alternatives and similar repositories for AP_histology:
Users that are interested in AP_histology are comparing it to the libraries listed below
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆73Updated 5 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 5 months ago
- ☆52Updated 6 months ago
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆21Updated 2 weeks ago
- Registration of cells across sessions.☆73Updated 6 months ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆117Updated last month
- pyqt5 dependent applications for IBL sessions☆26Updated 2 weeks ago
- Package for automatic post-processing and merging of multiple spike-sorting analyses.☆25Updated 9 months ago
- Match suite2p ROIs between imaging sessions☆25Updated 5 years ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆59Updated last week
- Fiber Photometry Modular Analysis Tool Suite☆36Updated 3 years ago
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆53Updated 2 weeks ago
- A gui for browsing joint calcium imaging + behavioral data.☆51Updated last month
- miniscope analysis pipeline with interactive visualizations☆92Updated 7 months ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- ☆11Updated 8 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆47Updated last year
- Utilities for managing Neuropixel datasets and Kilosort results☆46Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆86Updated 4 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Fiber photometry analysis☆22Updated 3 months ago
- Tools to work with Allen Inst CCF data in matlab☆129Updated last year
- ☆19Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆133Updated this week
- pynapple collaborative data analysis (high level python scripts)☆37Updated 11 months ago
- Plugins for Phy2☆16Updated last month
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆33Updated 2 weeks ago
- cortex lab code for electrophysiology☆79Updated last year
- "Approaches to Study Neural Circuits" course☆65Updated 3 months ago