brainglobe / brainglobe-heatmapLinks
Rendering anatomical heatmaps with brainrender and matplotlib
☆46Updated 2 weeks ago
Alternatives and similar repositories for brainglobe-heatmap
Users that are interested in brainglobe-heatmap are comparing it to the libraries listed below
Sorting:
- ☆52Updated last year
- Brainways☆21Updated 2 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Histology processing☆71Updated 2 months ago
- ☆10Updated 2 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated 2 years ago
- A package to manage electrophysiology analysis.☆23Updated last week
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated 2 weeks ago
- Anatomical space conventions made easy.☆12Updated 2 weeks ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Utility to create a basic Python project structure with tests, CI etc.☆33Updated 2 weeks ago
- Pose estimation scripts to be run on the SWC HPC cluster☆12Updated last year
- ☆18Updated 3 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 2 months ago
- brainglobe.info website☆11Updated last week
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- analysis tools for large-scale neural recordings☆16Updated 7 months ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆106Updated 3 months ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- A Python interface to access neuroanatomical atlases☆165Updated last week
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated this week
- Browser-based NWB visualization and DANDI exploration☆60Updated this week
- Collection of probe description for probeinterface☆17Updated last week
- Segmentation of anatomical structures in a common coordinate space☆34Updated 2 weeks ago
- Serial-section automated anatomy extension for ScanImage☆17Updated 2 weeks ago
- Fancier logging with python.☆14Updated 2 weeks ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆53Updated 2 years ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 8 months ago
- Re-usable GitHub Action scripts☆13Updated 2 weeks ago
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆19Updated last month