brainglobe / brainglobe-heatmap
Rendering anatomical heatmaps with brainrender and matplotlib
☆38Updated 2 weeks ago
Alternatives and similar repositories for brainglobe-heatmap:
Users that are interested in brainglobe-heatmap are comparing it to the libraries listed below
- Utility to create a basic Python project structure with tests, CI etc.☆28Updated this week
- Read and write files from the BrainGlobe neuroanatomy suite☆13Updated 2 weeks ago
- A package to manage electrophysiology analysis.☆17Updated this week
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆21Updated last week
- Pose estimation scripts to be run on the SWC HPC cluster☆12Updated last year
- Segmentation of anatomical structures in a common coordinate space☆30Updated 2 weeks ago
- ☆10Updated 2 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 5 months ago
- Re-usable GitHub Action scripts☆10Updated 2 weeks ago
- ☆18Updated 3 years ago
- Brainways☆16Updated last week
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆17Updated 3 months ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆15Updated last year
- Code for recreating the figures in the brainrender paper (Claudi et al. 2020)☆12Updated 4 years ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆16Updated 4 months ago
- Registration to BrainGlobe atlases in napari using Elastix☆21Updated last week
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 2 weeks ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Match suite2p ROIs between imaging sessions☆25Updated 5 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- Histology processing☆65Updated last week
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆48Updated last year
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆21Updated 2 years ago
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated 2 years ago
- ☆34Updated last year
- ☆51Updated 6 months ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 4 years ago