ramellose / manta
microbial association network clustering algorithm
☆13Updated 9 months ago
Related projects: ⓘ
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 5 months ago
- Plot microbiome time series in parallel☆23Updated 10 months ago
- ALDEx_bioc is the working directory for updating bioconductor☆26Updated 8 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆33Updated 5 months ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆20Updated 2 years ago
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆11Updated 5 years ago
- A Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomes☆13Updated 7 years ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆17Updated 5 months ago
- ☆17Updated last month
- ☆11Updated 3 years ago
- microbiome data simulation package☆18Updated last month
- A shiny package for microbiome functional enrichment analysis☆36Updated last month
- scripts for microbiome analysis☆11Updated last month
- Accurate metagenomi/metatranscriptomic analysis pipeline☆22Updated 3 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated 11 months ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 3 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 2 months ago
- ☆25Updated 3 weeks ago
- Factorize metagenotypes to infer strains and their abundances☆11Updated this week
- ☆28Updated 2 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 2 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Updated 2 years ago
- ☆26Updated 6 months ago
- Working with the outputs of sourmash in R☆22Updated 10 months ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆29Updated 3 years ago
- Dadaist2 🟨 Highway to R☆13Updated 7 months ago
- Batch effects removal for microbiome data via conditional quantile regression☆26Updated 2 years ago
- A microbiome analysis toolkit for R☆18Updated last year
- ☆11Updated last month