ramellose / mantaLinks
microbial association network clustering algorithm
☆14Updated last year
Alternatives and similar repositories for manta
Users that are interested in manta are comparing it to the libraries listed below
Sorting:
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated 11 months ago
- ☆31Updated 7 months ago
- Plot microbiome time series in parallel☆26Updated last year
- Working with the outputs of sourmash in R☆27Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆22Updated last year
- Factorize metagenotypes to infer strains and their abundances☆13Updated 11 months ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 months ago
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆12Updated 6 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆35Updated last year
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- MAGScoT - a MAG scoring and refinement tool☆36Updated 10 months ago
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago
- Scalable creating/updating of metagenome profiling databases☆63Updated 2 months ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 10 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆38Updated last year
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆32Updated 4 years ago
- A visualization tool for exploratory data analysis of metagenomic data☆37Updated 3 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆20Updated 2 weeks ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆47Updated 2 weeks ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆19Updated 4 months ago
- Gene-flank analysis tool☆29Updated 8 months ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Dadaist2 🟨 Highway to R☆13Updated 5 months ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆65Updated 2 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- selbal: selection of balances for microbial signatures☆32Updated 6 months ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- Robust Aitchison PCA from sparse count data☆36Updated 3 years ago