ramellose / mantaLinks
microbial association network clustering algorithm
☆13Updated last year
Alternatives and similar repositories for manta
Users that are interested in manta are comparing it to the libraries listed below
Sorting:
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- A functional profiler for metagenomes using FracMinHash☆16Updated 3 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- Plot microbiome time series in parallel☆26Updated last year
- ☆27Updated last year
- ☆21Updated 4 months ago
- ☆29Updated 5 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 9 months ago
- Dadaist2 🟨 Highway to R☆13Updated 3 months ago
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆12Updated 6 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 2 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆18Updated 7 months ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 7 months ago
- A fast method for analysis of composition of microbiomes☆8Updated 3 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- A Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomes☆13Updated 7 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 8 months ago
- MAG Circularization Method☆33Updated 3 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated this week
- Working with the outputs of sourmash in R☆27Updated last year
- scripts for microbiome analysis