Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations
☆14Nov 24, 2025Updated 3 months ago
Alternatives and similar repositories for paramedic
Users that are interested in paramedic are comparing it to the libraries listed below
Sorting:
- Tools for analyzing trees☆13Apr 16, 2025Updated 11 months ago
- diversity estimation under ecological networks☆83Jul 29, 2025Updated 7 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆27Jul 22, 2024Updated last year
- Species richness with high diversity☆68Aug 5, 2025Updated 7 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Feb 5, 2022Updated 4 years ago
- Site that contains musings and code for compositional analysis of high throughput sequencing experiments☆17Apr 18, 2024Updated last year
- ☆13Aug 13, 2024Updated last year
- Count Regression for Correlated Observations with the Beta-binomial☆107Nov 13, 2025Updated 4 months ago
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated last month
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Jan 24, 2024Updated 2 years ago
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 3 months ago
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes☆10Nov 14, 2022Updated 3 years ago
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆48Apr 14, 2020Updated 5 years ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆170Sep 4, 2025Updated 6 months ago
- This is a read-only mirror of the CRAN R package repository. colorspace — A Toolbox for Manipulating and Assessing Colors and Palettes.…☆12Sep 22, 2025Updated 5 months ago
- R package for computing alpha and beta contributional diversity metrics☆11May 5, 2023Updated 2 years ago
- Automated synthetic microbial Community Design☆13Mar 26, 2021Updated 4 years ago
- ☆49Mar 13, 2024Updated 2 years ago
- Processing support for Greengenes2☆14Jul 31, 2023Updated 2 years ago
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 4 months ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- Horizontal gene transfer (HGT) identification pipeline☆69May 17, 2023Updated 2 years ago
- creating reference databases for amplicon sequencing☆48Jan 13, 2026Updated 2 months ago
- NovelTree is a highly parallelized and computationally efficient phylogenomic workflow that infers gene families, gene family trees, spec…☆23Updated this week
- microbial association network clustering algorithm☆14Dec 14, 2023Updated 2 years ago
- Compare different differential abundance and expression methods☆53Mar 8, 2022Updated 4 years ago
- Simple R utilities for working with HMMER☆19Oct 3, 2024Updated last year
- D3 based visualisation for comparative genomics☆15Oct 6, 2016Updated 9 years ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆47Feb 16, 2026Updated last month
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated last year
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Jan 21, 2022Updated 4 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆72Mar 3, 2026Updated 2 weeks ago
- MetaCompare☆19Mar 3, 2024Updated 2 years ago
- R package for fetching and parsing data of the Human Microbiome Compendium☆17Jan 24, 2025Updated last year
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16May 29, 2024Updated last year
- ☆20Apr 24, 2025Updated 10 months ago
- R package for searching, downloading and analysis of EBI MGnify metagenomics data☆23Feb 13, 2026Updated last month
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago