An R package for learning log-ratio biomarkers from high-throughput sequencing data.
☆23Mar 31, 2023Updated 2 years ago
Alternatives and similar repositories for R-codacore
Users that are interested in R-codacore are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- selbal: selection of balances for microbial signatures☆32Feb 24, 2025Updated last year
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Aug 26, 2024Updated last year
- A functional profiler for metagenomes using FracMinHash☆21Jul 14, 2025Updated 8 months ago
- Sparse Cooccurence Network Investigation for Compositional data☆25Feb 1, 2026Updated last month
- Phylogenetic Isometric Log Ratio☆19Oct 15, 2024Updated last year
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- An R package to visualize high-throughput sequencing data.☆12Nov 18, 2019Updated 6 years ago
- tree-aggregated compositional analysis for high-throughput sequencing data☆10Aug 24, 2022Updated 3 years ago
- microbial association network clustering algorithm☆14Dec 14, 2023Updated 2 years ago
- ☆19Nov 26, 2020Updated 5 years ago
- Supercharged pandas indexing☆11Mar 28, 2021Updated 4 years ago
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆15Dec 20, 2024Updated last year
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23Jun 27, 2022Updated 3 years ago
- An R Package for Integrated Analysis and Visualization of Microbiome Data☆18Feb 19, 2026Updated last month
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆98Jul 12, 2024Updated last year
- MAGScoT - a MAG scoring and refinement tool☆43Oct 10, 2024Updated last year
- A package to annotate protein sequences☆62Feb 23, 2025Updated last year
- Analyses in R and Python Using curatedMetagenomicData☆34Nov 16, 2025Updated 4 months ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆17Jan 13, 2026Updated 2 months ago
- compositional data analysis toolbox☆60Dec 15, 2022Updated 3 years ago
- Site that contains musings and code for compositional analysis of high throughput sequencing experiments☆17Apr 18, 2024Updated last year
- Kinship In Mixed Model Analysis of RNA-seq☆15Apr 14, 2025Updated 11 months ago
- BiomeNED main code☆12Jul 25, 2019Updated 6 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Dec 7, 2021Updated 4 years ago
- This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens…☆11Aug 1, 2023Updated 2 years ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Mar 13, 2026Updated last week
- Companion notebooks for "Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks"☆11Jul 13, 2018Updated 7 years ago
- ANnotation-based ANalysis of Specific Interactions☆10Oct 10, 2025Updated 5 months ago
- [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data☆78Feb 13, 2026Updated last month
- mbImpute: an accurate and robust imputation method for microbiome data☆11Aug 19, 2021Updated 4 years ago
- ☆16Nov 5, 2021Updated 4 years ago
- An implementation of the prediction strength algorithm from Tibshirani, Walther, Botstein, and Brown's "Cluster validation by prediction …☆18Feb 17, 2011Updated 15 years ago
- Robust Aitchison PCA from sparse count data☆37Aug 17, 2022Updated 3 years ago
- ☆18Mar 20, 2025Updated last year
- Bacterial Annotation by Learned Representation of Genes☆60Jan 22, 2021Updated 5 years ago
- Neptune: Genomic Signature Discovery☆21Nov 20, 2024Updated last year
- R package: determining cutoff values from bimodal data☆11Mar 17, 2024Updated 2 years ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆99Feb 8, 2026Updated last month