egr95 / R-codacore
An R package for learning log-ratio biomarkers from high-throughput sequencing data.
☆22Updated last year
Alternatives and similar repositories for R-codacore:
Users that are interested in R-codacore are comparing it to the libraries listed below
- Batch effects removal for microbiome data via conditional quantile regression☆26Updated 2 years ago
- selbal: selection of balances for microbial signatures☆31Updated 8 months ago
- microbial association network clustering algorithm☆13Updated last year
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- ☆27Updated last year
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 8 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆36Updated 10 months ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- ☆20Updated 4 years ago
- ☆35Updated last year
- ☆32Updated last year
- A microbial profiling framework for metagenomic analysis☆24Updated 4 years ago
- A Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomes☆13Updated 7 years ago
- A fast method for analysis of composition of microbiomes☆8Updated 2 years ago
- ☆14Updated 2 months ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆22Updated 2 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆33Updated 3 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆22Updated 3 years ago
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- ☆15Updated 3 years ago
- COmpositional Zero-Inflated Network Estimation☆10Updated last year
- OPAL: Open-community Profiling Assessment tooL☆27Updated 2 weeks ago
- Robust Aitchison PCA from sparse count data☆33Updated 2 years ago
- Factorize metagenotypes to infer strains and their abundances☆11Updated 4 months ago
- Analyses in R and Python Using curatedMetagenomicData☆29Updated 3 weeks ago
- ☆27Updated 3 weeks ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last year
- A repo to reproduce the experiments in the YACHT manuscript☆11Updated last year
- gutSMASH☆54Updated last month
- A microbiome analysis toolkit for R☆21Updated last year