Alternatives and similar repositories for R-codacore:

Users that are interested in R-codacore are comparing it to the libraries listed below

• wdl2459 / ConQuR
  Batch effects removal for microbiome data via conditional quantile regression
  ☆27Updated 2 years ago
• ramellose / manta
  microbial association network clustering algorithm
  ☆13Updated last year
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆16Updated last year
• malucalle / selbal
  selbal: selection of balances for microbial signatures
  ☆31Updated 2 months ago
• biocore / DEICODE
  Robust Aitchison PCA from sparse count data
  ☆34Updated 2 years ago
• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆28Updated last week
• FrederickHuangLin / ANCOM-BC-Code-Archive
  Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …
  ☆30Updated 4 years ago
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆35Updated last year
• Shenhav-and-Korem-labs / SCRuB
  ☆29Updated 4 months ago
• blekhmanlab / MicroBioMap
  R package for fetching and parsing data of the Human Microbiome Compendium
  ☆10Updated 3 months ago
• segalab / SGVFinder
  ☆32Updated last year
• zhouhj1994 / LinDA
  ☆36Updated last year
• waldronlab / curatedMetagenomicDataAnalyses
  Analyses in R and Python Using curatedMetagenomicData
  ☆31Updated last month
• GraceYoon / SPRING
  Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data
  ☆24Updated 2 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated 3 weeks ago
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆26Updated last year
• ZRChao / fastANCOM
  A fast method for analysis of composition of microbiomes
  ☆8Updated 3 years ago
• jiaonall / CRC-multi-kingdom
  This is the supplementary code for CRC-multi-kingdom
  ☆17Updated 3 years ago
• KoslickiLab / YACHT-reproducibles
  A repo to reproduce the experiments in the YACHT manuscript
  ☆11Updated last year
• biobakery / anpan
  ☆10Updated 4 months ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆27Updated 6 years ago
• victoriapascal / gutsmash
  gutSMASH
  ☆53Updated 4 months ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆28Updated 3 months ago
• GRONINGEN-MICROBIOME-CENTRE / DMP
  Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…
  ☆34Updated 3 years ago
• muzafferarikan / gNOMO2
  gNOMO2 allows integrated multi-omics analyses of microbiomes
  ☆14Updated 9 months ago
• biocore / BIRDMAn
  Bayesian Inferential Regression for Differential Microbiome Analysis
  ☆22Updated last year
• biobakery / maaslin3
  MaAsLin3: Microbiome Multivariate Association with Linear Models
  ☆35Updated last month
• SegataLab / cmseq
  Set of utilities on sequences and BAM files
  ☆27Updated 3 years ago
• pixushi / tempted
  ☆15Updated 5 months ago
• krisrs1128 / microbiome_plvm
  Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."
  ☆21Updated 5 years ago