blekhmanlab / host_gene_microbiome_interactionsLinks
Analysis framework for integrating gut microbiome and host gene expression data
☆32Updated 3 years ago
Alternatives and similar repositories for host_gene_microbiome_interactions
Users that are interested in host_gene_microbiome_interactions are comparing it to the libraries listed below
Sorting:
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆57Updated this week
- Time-Course Multi-Omics data integration☆25Updated last year
- Scripts for stat and plot figures in rice microbiome paper☆19Updated 6 years ago
- Code and analysis results for the CRC shotgun meta-analysis☆39Updated 2 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated last month
- A repository for large-scale microbiome datasets, formatted for phyloseq☆38Updated last year
- ☆14Updated 3 years ago
- Transcriptomics Visualization R package.☆72Updated last month
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆32Updated 2 years ago
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆41Updated 4 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆28Updated 2 years ago
- Create KEGG.db Package☆60Updated 2 years ago
- The code for running the analysis component of CSI-Microbe☆12Updated last year
- Network analysis for multi-omics☆54Updated this week
- Professional Comprehensive Omics Data Analysis☆19Updated 6 months ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆42Updated 3 weeks ago
- gutSMASH☆53Updated 5 months ago
- This is the supplementary code for CRC-multi-kingdom☆17Updated 3 years ago
- ☆56Updated last year
- ☆45Updated 5 years ago
- pathway based data integration and visualization☆41Updated 2 months ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆27Updated last year
- ☆18Updated 2 years ago
- ☆23Updated 5 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last year
- 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo…☆36Updated 3 years ago
- R implementation of the LEfSe method☆59Updated last month
- Microbe-Metabolite INteractions-based metabolic profiles Predictor☆15Updated 2 years ago
- ☆30Updated 4 years ago
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆34Updated 4 years ago