Compare different differential abundance and expression methods
☆54Mar 8, 2022Updated 4 years ago
Alternatives and similar repositories for DAtest
Users that are interested in DAtest are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12May 25, 2022Updated 4 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆26Aug 20, 2026Updated last month
- ☆39Jan 13, 2022Updated 4 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 7 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 10 months ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- ☆13Feb 5, 2022Updated 4 years ago
- This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions f…☆74Jun 6, 2024Updated 2 years ago
- Differential analysis of multi-omics data based on the Tweedie distribution☆32Sep 28, 2026Updated last week
- ☆15Feb 6, 2020Updated 6 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆31Nov 23, 2022Updated 3 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated 2 years ago
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆13Jan 14, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- microbial association network clustering algorithm☆14Dec 14, 2023Updated 2 years ago
- StrainFinder☆29Jul 8, 2018Updated 8 years ago
- ☆18Aug 27, 2026Updated last month
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆41Sep 20, 2026Updated 3 weeks ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆57Updated this week
- Dissimilarity Overlap Curve analysis☆11Nov 14, 2022Updated 3 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆26Sep 9, 2026Updated last month
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- Pangenome Analysis in Prokaryotes Lesson☆13Aug 20, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Neural networks for microbe-metabolite interaction analysis☆131Nov 4, 2022Updated 3 years ago
- Tutorials☆15Apr 2, 2022Updated 4 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆73Sep 1, 2022Updated 4 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆11Jul 13, 2020Updated 6 years ago
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- ☆11Jul 3, 2022Updated 4 years ago
- ☆44Nov 20, 2017Updated 8 years ago
- ☆66Apr 14, 2026Updated 5 months ago
- qiime2 plugin for aldex2 for differential abundance analysis☆11Mar 5, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆466Feb 13, 2026Updated 7 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Jun 7, 2023Updated 3 years ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- Python tool for the analysis and visualization of mobile genetic elements☆20May 26, 2025Updated last year
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated 5 months ago
- Official Edison Lab toolboxes and scripts for analyzing metabolomics data.☆14Mar 8, 2023Updated 3 years ago
- wrangling and model-free analysis of microbial growth curve data in R with gcplyr☆39Updated this week