Compare different differential abundance and expression methods
☆54Mar 8, 2022Updated 4 years ago
Alternatives and similar repositories for DAtest
Users that are interested in DAtest are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12May 25, 2022Updated 4 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆26Jun 3, 2026Updated 2 months ago
- ☆39Jan 13, 2022Updated 4 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 7 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Jan 29, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 8 months ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- ☆13Feb 5, 2022Updated 4 years ago
- This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions f…☆74Jun 6, 2024Updated 2 years ago
- Differential analysis of multi-omics data based on the Tweedie distribution☆31May 7, 2026Updated 3 months ago
- ☆14Feb 6, 2020Updated 6 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Nov 23, 2022Updated 3 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated 2 years ago
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆13Jan 14, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- microbial association network clustering algorithm☆14Dec 14, 2023Updated 2 years ago
- StrainFinder☆30Jul 8, 2018Updated 8 years ago
- ☆18Nov 19, 2024Updated last year
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆39Apr 9, 2026Updated 4 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆54Jul 21, 2026Updated 3 weeks ago
- Dissimilarity Overlap Curve analysis☆11Nov 14, 2022Updated 3 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆26Aug 4, 2026Updated last week
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- Pangenome Analysis in Prokaryotes Lesson☆13Aug 20, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Neural networks for microbe-metabolite interaction analysis☆133Nov 4, 2022Updated 3 years ago
- Tutorials☆15Apr 2, 2022Updated 4 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆74Sep 1, 2022Updated 3 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆11Jul 13, 2020Updated 6 years ago
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- ☆11Jul 3, 2022Updated 4 years ago
- ☆44Nov 20, 2017Updated 8 years ago
- ☆66Apr 14, 2026Updated 3 months ago
- qiime2 plugin for aldex2 for differential abundance analysis☆11Mar 5, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆460Feb 13, 2026Updated 5 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Jun 7, 2023Updated 3 years ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- Python tool for the analysis and visualization of mobile genetic elements☆20May 26, 2025Updated last year
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated 3 months ago
- Official Edison Lab toolboxes and scripts for analyzing metabolomics data.☆14Mar 8, 2023Updated 3 years ago
- wrangling and model-free analysis of microbial growth curve data in R with gcplyr☆39May 8, 2026Updated 3 months ago