Compare different differential abundance and expression methods
☆53Mar 8, 2022Updated 4 years ago
Alternatives and similar repositories for DAtest
Users that are interested in DAtest are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12May 25, 2022Updated 3 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆26Jan 15, 2026Updated 3 months ago
- ☆38Jan 13, 2022Updated 4 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 6 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 5 months ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- ☆13Feb 5, 2022Updated 4 years ago
- Automated synthetic microbial Community Design☆13Mar 26, 2021Updated 5 years ago
- This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions f…☆73Jun 6, 2024Updated last year
- Differential analysis of multi-omics data based on the Tweedie distribution☆30Nov 20, 2025Updated 5 months ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆37Apr 7, 2026Updated 3 weeks ago
- ☆14Feb 6, 2020Updated 6 years ago
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆13Jan 14, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Nov 23, 2022Updated 3 years ago
- ☆18Nov 19, 2024Updated last year
- microbial association network clustering algorithm☆14Dec 14, 2023Updated 2 years ago
- StrainFinder☆30Jul 8, 2018Updated 7 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆38Apr 9, 2026Updated 3 weeks ago
- Dissimilarity Overlap Curve analysis☆11Nov 14, 2022Updated 3 years ago
- Microbiome conferences and scientific meetings.☆30Mar 31, 2026Updated last month
- Sparse Cooccurence Network Investigation for Compositional data☆25Feb 1, 2026Updated 3 months ago
- Python tool for the analysis and visualization of mobile genetic elements☆20May 26, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- Tutorials☆15Apr 2, 2022Updated 4 years ago
- ☆43Nov 20, 2017Updated 8 years ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆11Jul 13, 2020Updated 5 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆75Sep 1, 2022Updated 3 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- qiime2 plugin for aldex2 for differential abundance analysis☆11Mar 5, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Neural networks for microbe-metabolite interaction analysis☆131Nov 4, 2022Updated 3 years ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆460Feb 13, 2026Updated 2 months ago
- wrangling and model-free analysis of microbial growth curve data in R with gcplyr☆38Apr 23, 2026Updated last week
- ☆65Apr 14, 2026Updated 2 weeks ago
- Snakemake workflow for metagenomic classification with Kraken2☆67Jun 7, 2023Updated 2 years ago
- Official Edison Lab toolboxes and scripts for analyzing metabolomics data.☆14Mar 8, 2023Updated 3 years ago
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated 2 weeks ago