Fit LOg-RAtio Lasso regression for compositional covariates
☆16Jun 5, 2026Updated 3 weeks ago
Alternatives and similar repositories for FLORAL
Users that are interested in FLORAL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆40Dec 16, 2023Updated 2 years ago
- ☆19Mar 8, 2026Updated 3 months ago
- Genome-informed, trait-based dynamic energy budget modeling of microbes with ML analysis of emergent strategies☆19Feb 18, 2026Updated 4 months ago
- Count Regression for Correlated Observations with the Beta-binomial☆108Nov 13, 2025Updated 7 months ago
- ☆21Dec 15, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆18Nov 7, 2019Updated 6 years ago
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated 2 years ago
- ☆18Nov 19, 2024Updated last year
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- Species richness with high diversity☆68Updated this week
- A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for M…☆11Updated this week
- An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.☆19May 30, 2023Updated 3 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆27Feb 6, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Functions for compositional analysis of high throughput sequencing☆29Dec 8, 2023Updated 2 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆129Jun 1, 2026Updated 3 weeks ago
- R package for fetching and parsing data of the Human Microbiome Compendium☆17May 6, 2026Updated last month
- STAMPS 2018 course☆14Aug 8, 2018Updated 7 years ago
- Materials for the STAMPS 2024 course at the MBL in Woods Hole, MA, USA☆13Jul 25, 2024Updated last year
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- microbial association network clustering algorithm☆14Dec 14, 2023Updated 2 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Apr 21, 2021Updated 5 years ago
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆16Dec 20, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code used for the single-cell RNA-Seq batch effects paper☆12Sep 25, 2017Updated 8 years ago
- ☆13Jul 6, 2022Updated 3 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆35Oct 19, 2020Updated 5 years ago
- Presentation at the Joint Statistical Meetings 2021☆12Aug 8, 2021Updated 4 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Jun 14, 2025Updated last year
- ☆32Jan 4, 2025Updated last year
- A flexible parser generator producing output from object-oriented hierarchical context-free grammar specifications.☆12Nov 16, 2021Updated 4 years ago
- MIMIX: a Bayesian Mixed-Effects Model for Microbiome Data from Designed Experiments☆11Jul 9, 2020Updated 5 years ago
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆17Feb 19, 2026Updated 4 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆17Jun 19, 2026Updated last week
- BiomeNED main code☆12Jul 25, 2019Updated 6 years ago
- ☆14May 1, 2024Updated 2 years ago
- A context aware tool for proteasomal cleavage predictions☆16Jun 10, 2026Updated 2 weeks ago
- Zero-Inflated Beta Random Effect model☆31Mar 6, 2026Updated 3 months ago
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆26Nov 3, 2025Updated 7 months ago
- ☆17Feb 5, 2025Updated last year