r-bioinformatics / edgePyLinks
A Python implementation of edgeR for differential expression analysis
☆103Updated 6 years ago
Alternatives and similar repositories for edgePy
Users that are interested in edgePy are comparing it to the libraries listed below
Sorting:
- Python biomart API☆68Updated 2 years ago
- A simple pythonic interface to biomart.☆56Updated 5 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated last year
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- Parsing tools for GTF (gene transfer format) files☆121Updated 7 months ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆112Updated 10 months ago
- Porting DESeq2 into python via rpy2☆68Updated 2 years ago
- machine-readable file format for genomic library sequence and structure☆123Updated last month
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆86Updated 4 months ago
- Normalization of RNA-seq gene expression☆100Updated 2 months ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆105Updated last month
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- GeneWalk identifies relevant gene functions for a biological context using network representation learning☆131Updated last year
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆114Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆106Updated 4 months ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆95Updated last year
- Alternative splicing resource☆56Updated 7 years ago
- MyGene.info: A BioThings API for gene annotations☆128Updated last month
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆48Updated 2 years ago
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆98Updated last year
- A Python-based EGA download client☆107Updated last year
- Tools for working with BUS files☆101Updated 4 months ago
- Jupyter notebook based genomic data visualization toolkit.☆247Updated 5 months ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆105Updated 3 years ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆74Updated 2 years ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 9 months ago
- small rna-seq analysis package☆30Updated 2 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- liftover for python, made fast with cython☆89Updated 4 months ago
- Clustering motif models to remove redundancy☆42Updated 2 years ago