Alternatives and similar repositories for edgePy:

Users that are interested in edgePy are comparing it to the libraries listed below

• wckdouglas / diffexpr
  Porting DESeq2 into python via rpy2
  ☆68Updated last year
• sebriois / biomart
  Python biomart API
  ☆65Updated last year
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆55Updated 5 years ago
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆101Updated 4 months ago
• vanheeringen-lab / gimmemotifs
  Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…
  ☆115Updated last year
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆142Updated last year
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆119Updated 3 weeks ago
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆82Updated 3 years ago
• CostaLab / reg-gen
  Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
  ☆108Updated 4 months ago
• aertslab / SCope
  Fast visualization tool for large-scale and high dimensional single-cell data
  ☆69Updated 2 years ago
• deweylab / CellO
  CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
  ☆65Updated last year
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆117Updated 2 years ago
• nsalomonis / altanalyze
  AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…
  ☆100Updated 2 years ago
• single-cell-genetics / cellsnp-lite
  Efficient genotyping bi-allelic SNPs on single cells
  ☆142Updated 9 months ago
• genialis / RNAnorm
  Normalization of RNA-seq gene expression
  ☆85Updated last month
• timoast / sinto
  Tools for single-cell data processing
  ☆122Updated 9 months ago
• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆75Updated last year
• TrinityCTAT / Trinity_CTAT
  ☆116Updated last year
• zktuong / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
  ☆112Updated this week
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆44Updated 2 years ago
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆116Updated 3 weeks ago
• linnarsson-lab / loompy
  Python implementation of the Loom file format - http://loompy.org
  ☆142Updated 3 months ago
• rnakato / ShortCake
  A docker image for single-cell analysis
  ☆82Updated last month
• hbc / NGS_Data_Analysis_Course
  ☆23Updated 8 years ago
• YeoLab / single-cell-bioinformatics
  Course material in notebook format for learning about single cell bioinformatics methods
  ☆102Updated 8 years ago
• vanallenlab / comut
  CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
  ☆91Updated 7 months ago
• FunctionLab / ExPecto
  predicting expression effects of human genome variants ab initio from sequence
  ☆127Updated last month
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆111Updated 2 years ago
• RabadanLab / arcasHLA
  Fast and accurate in silico inference of HLA genotypes from RNA-seq
  ☆126Updated 7 months ago
• broadinstitute / single_cell_portal
  Tutorials, workflows, and convenience scripts for Single Cell Portal
  ☆50Updated last year