zqfang / GSEApy
Gene Set Enrichment Analysis in Python
☆596Updated this week
Alternatives and similar repositories for GSEApy:
Users that are interested in GSEApy are comparing it to the libraries listed below
- scripts and notebooks from sanbomics☆387Updated 2 months ago
- PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)☆233Updated this week
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆470Updated 10 months ago
- Collections of library structure and sequence of popular single cell genomic methods☆448Updated 2 months ago
- Intro to ChIPseq using HPC☆294Updated 2 years ago
- List of software packages for multi-omics analysis☆757Updated 9 months ago
- This is the alpha version of the CellOracle package☆331Updated last month
- ☆383Updated 3 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆791Updated 7 months ago
- A list of scRNA-seq analysis tools☆667Updated last month
- A tool to find sequencing data and metadata from public databases.☆564Updated 6 months ago
- ☆550Updated 3 years ago
- Table of software for the analysis of single-cell RNA-seq data.☆313Updated this week
- ENCODE ATAC-seq pipeline☆401Updated 6 months ago
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.☆623Updated this week
- RNA-seq workflow using STAR and DESeq2☆335Updated 6 months ago
- RNA Velocity generalized through dynamical modeling☆425Updated 2 months ago
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆388Updated 8 months ago
- tools and notes for spatial omics☆265Updated 4 months ago
- 10x Genomics Single Cell Analysis☆380Updated this week
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆415Updated last week
- Analysis of single cell RNA-seq data course☆674Updated 2 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆310Updated last year
- ChIP-seq analysis notes from Ming Tang☆770Updated 6 months ago
- A tool for semi-automatic cell type classification☆333Updated last month
- Reference mapping for single-cell genomics☆347Updated last month
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆559Updated last month
- Benchmarking analysis of data integration tools☆331Updated last month
- A package to help convert different single-cell data formats to each other☆405Updated 11 months ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆405Updated last month