zqfang / GSEApyLinks
Gene Set Enrichment Analysis in Python
☆632Updated this week
Alternatives and similar repositories for GSEApy
Users that are interested in GSEApy are comparing it to the libraries listed below
Sorting:
- python module to plot beautiful and highly customizable genome browser tracks☆813Updated 10 months ago
- ENCODE ATAC-seq pipeline☆418Updated 10 months ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆488Updated last month
- scripts and notebooks from sanbomics☆409Updated 6 months ago
- Collections of library structure and sequence of popular single cell genomic methods☆467Updated 2 weeks ago
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.☆652Updated this week
- Intro to ChIPseq using HPC☆307Updated 2 years ago
- List of software packages for multi-omics analysis☆798Updated last month
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆425Updated 2 weeks ago
- ☆393Updated 3 years ago
- ChIP-seq analysis notes from Ming Tang☆802Updated 10 months ago
- This is the alpha version of the CellOracle package☆356Updated 4 months ago
- Python library to handle Gene Ontology (GO) terms☆827Updated last week
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆504Updated last year
- Benchmarking analysis of data integration tools☆358Updated 4 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆342Updated 3 months ago
- A list of scRNA-seq analysis tools☆702Updated this week
- RNA Velocity generalized through dynamical modeling☆447Updated 3 months ago
- PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)☆246Updated 3 months ago
- ☆355Updated 3 years ago
- A repository for setting up a RNAseq workflow☆431Updated 8 years ago
- Table of software for the analysis of single-cell RNA-seq data.☆324Updated this week
- GTEx & TOPMed data production and analysis pipelines☆369Updated last week
- Analysis of single cell RNA-seq data course☆674Updated 3 years ago
- ☆565Updated 4 years ago
- T/B cell receptor sequencing analysis notes☆255Updated 6 months ago
- Bioinformatics one liners from Ming Tang☆484Updated 4 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆411Updated last month
- Analysis Pipeline for Single Cell ATAC-seq☆318Updated 2 years ago
- A tool to find sequencing data and metadata from public databases.☆576Updated 9 months ago