zqfang / GSEApyLinks
Gene Set Enrichment Analysis in Python
☆648Updated this week
Alternatives and similar repositories for GSEApy
Users that are interested in GSEApy are comparing it to the libraries listed below
Sorting:
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.☆663Updated this week
- scripts and notebooks from sanbomics☆432Updated 8 months ago
- Python library to handle Gene Ontology (GO) terms☆845Updated 2 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆527Updated last month
- RNA Velocity generalized through dynamical modeling☆456Updated 5 months ago
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆699Updated this week
- This is the alpha version of the CellOracle package☆372Updated 7 months ago
- PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)☆258Updated 5 months ago
- 10x Genomics Single Cell Analysis☆424Updated 5 months ago
- Collections of library structure and sequence of popular single cell genomic methods☆473Updated 2 months ago
- Bioinformatics data analysis and visualization toolkit☆353Updated last year
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆426Updated last week
- python module to plot beautiful and highly customizable genome browser tracks☆831Updated last year
- List of software packages for multi-omics analysis☆819Updated 3 months ago
- A list of scRNA-seq analysis tools☆720Updated 2 weeks ago
- A tool for semi-automatic cell type classification☆395Updated this week
- Benchmarking analysis of data integration tools☆373Updated 6 months ago
- Reference mapping for single-cell genomics☆375Updated 2 weeks ago
- ENCODE ATAC-seq pipeline☆426Updated last year
- A package to help convert different single-cell data formats to each other☆434Updated last year
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆499Updated this week
- NicheNet: predict active ligand-target links between interacting cells☆559Updated 2 weeks ago
- https://www.sc-best-practices.org☆975Updated 3 weeks ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆355Updated 5 months ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆465Updated last month
- tools and notes for spatial omics☆311Updated 5 months ago
- Analysis of single cell RNA-seq data course☆674Updated 3 years ago
- ☆572Updated 4 years ago
- A collection of tools for Hi-C data analysis☆600Updated 2 weeks ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆291Updated 3 weeks ago