kundajelab / genomelakeLinks
Simple and efficient access to genomic data for deep learning models.
☆42Updated 5 years ago
Alternatives and similar repositories for genomelake
Users that are interested in genomelake are comparing it to the libraries listed below
Sorting:
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- Efficient handling of FASTQ files from Python☆51Updated 2 months ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- Downloader for ENCODE☆32Updated 5 years ago
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 8 years ago
- ☆25Updated 4 years ago
- Build an index for your BAM Index (BAI)☆17Updated 10 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 9 months ago
- A flexible python program for generating figures from regions of the genome.☆13Updated 6 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆28Updated last month
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 9 years ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Updated last year
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆23Updated this week
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- A Python interface to the Ensembl REST APIs, biological data at your fingertips.☆12Updated last year
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 4 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated 2 months ago