kundajelab / genomelake
Simple and efficient access to genomic data for deep learning models.
☆43Updated 5 years ago
Alternatives and similar repositories for genomelake:
Users that are interested in genomelake are comparing it to the libraries listed below
- Deep Feature Interaction Maps (DFIM)☆53Updated 5 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated last year
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- Downloader for ENCODE☆32Updated 4 years ago
- Tissue-specific variant effect predictions on splicing☆41Updated last year
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 7 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆40Updated 8 years ago
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- 3D hotspot mutation proximity analysis tool☆46Updated last year
- DSDE Deep Learning Club☆40Updated 5 years ago
- Universal RObust Peak Annotator☆15Updated last year
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 7 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆25Updated this week
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- A Python package for gene network analysis☆32Updated 2 years ago
- FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program☆19Updated 3 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- ☆41Updated 6 years ago
- Biological Graphic tool in Python☆34Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆49Updated 5 years ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Updated last year
- Understanding sequence conservation with deep learning☆20Updated 8 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆81Updated 6 months ago
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆26Updated 5 years ago
- Core functionality of the CGAT code☆33Updated 2 months ago