kundajelab / genomelake
Simple and efficient access to genomic data for deep learning models.
☆43Updated 5 years ago
Alternatives and similar repositories for genomelake:
Users that are interested in genomelake are comparing it to the libraries listed below
- Deep Feature Interaction Maps (DFIM)☆53Updated 5 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated last year
- Tissue-specific variant effect predictions on splicing☆40Updated last year
- Code for the CRISPOR article, all data and code to create figures and analysis☆40Updated 8 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆26Updated 5 years ago
- ☆41Updated 6 years ago
- Downloader for ENCODE☆32Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- 3D hotspot mutation proximity analysis tool☆46Updated last year
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 7 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- Biological Graphic tool in Python☆34Updated 4 years ago
- Understanding sequence conservation with deep learning☆20Updated 7 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 3 years ago
- Universal RObust Peak Annotator☆15Updated last year
- EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…☆69Updated 2 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 7 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- DSDE Deep Learning Club☆40Updated 5 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆35Updated 7 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆25Updated last month
- A genome browser in your Jupyter notebook☆30Updated 2 months ago
- Fishers Exact Test for Python (Cython)☆64Updated 6 months ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 8 years ago