Simple and efficient access to genomic data for deep learning models.
☆42Jan 9, 2020Updated 6 years ago
Alternatives and similar repositories for genomelake
Users that are interested in genomelake are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Yet Another Motif Discovery Algorithm☆53Jan 10, 2019Updated 7 years ago
- A deep learning package for predicting TF binding☆42Jan 23, 2020Updated 6 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 7 years ago
- ☆10May 16, 2020Updated 5 years ago
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44May 29, 2018Updated 7 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆34Jan 7, 2020Updated 6 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆83Sep 3, 2024Updated last year
- DSDE Deep Learning Club☆40Mar 28, 2019Updated 7 years ago
- ☆11Mar 16, 2020Updated 6 years ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- Deep learning infrastructure for genomics☆257Sep 29, 2021Updated 4 years ago
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated last year
- Model zoo for genomics☆174Dec 17, 2025Updated 3 months ago
- Tissue-specific variant effect predictions on splicing☆42May 23, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A python library for creating simulated regulatory DNA sequences☆39Feb 22, 2023Updated 3 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Oct 22, 2019Updated 6 years ago
- A toolkit to learn how to model and interpret regulatory sequence data using deep learning.☆264Aug 1, 2023Updated 2 years ago
- Open compressed files in Python☆81Oct 12, 2025Updated 5 months ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆68Nov 4, 2021Updated 4 years ago
- TF MOtif Discovery from Importance SCOres☆170Feb 20, 2026Updated last month
- Downloader for ENCODE☆32Oct 5, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 7 months ago
- Convert DeepBind models to Keras☆12Jul 15, 2018Updated 7 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Apr 9, 2018Updated 7 years ago
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 3 months ago
- Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…☆120Mar 17, 2022Updated 4 years ago
- Getting started guide to using GPUs for nCoV2019 research☆14Apr 24, 2020Updated 5 years ago
- Immutant adapter for Luminus☆10Sep 12, 2020Updated 5 years ago
- Concise: Keras extension for regulatory genomics☆35Dec 26, 2022Updated 3 years ago
- Minhash and maxhash library in Python, combining flexibility, expressivity, and performance.☆22Dec 14, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆24Oct 9, 2019Updated 6 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Jul 19, 2021Updated 4 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13May 3, 2019Updated 6 years ago
- ☆10Jul 23, 2020Updated 5 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆26Dec 11, 2017Updated 8 years ago
- ☆10Oct 6, 2020Updated 5 years ago