IQTLabs / freqgenLinks
π― Generate DNA sequences with specified amino acid, codon, and k-mer frequencies
β17Updated 2 years ago
Alternatives and similar repositories for freqgen
Users that are interested in freqgen are comparing it to the libraries listed below
Sorting:
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algebβ¦β23Updated 10 months ago
- π DNA Sequence Visualization for Humansβ41Updated 4 years ago
- A lightweight Python graphing API for genomic featuresβ15Updated 3 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.β16Updated 7 years ago
- Library for indexing VCF files for random access searches by rsIDβ17Updated 2 months ago
- Efficient handling of FASTQ files from Pythonβ51Updated 2 months ago
- Biological Graphic tool in Pythonβ34Updated 5 years ago
- Homebrew formulae for bioinformatics software only available for Linuxβ27Updated 6 years ago
- robust matching of small variant datasets using flexible scoring schemesβ11Updated 5 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQβ11Updated 8 years ago
- Streaming sequence classification with web services βπβ19Updated 2 years ago
- Library for visualising genomic features in Python.β15Updated 8 years ago
- python stuff I useβ19Updated 5 years ago
- kaamer - protein identification based on amino acid kmersβ12Updated 2 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Pythonβ21Updated 2 years ago
- Fishers Exact Test for Python (Cython)β66Updated 6 months ago
- Build an index for your BAM Index (BAI)β17Updated 10 years ago
- Build sourmash databases for genbank.β11Updated 2 years ago
- Manuscript describing ChronQC is now available online in Bioinformaticsβ18Updated 6 years ago
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.β27Updated 3 years ago
- Artisanal π€£ bioinformatics tools and pipelines in Scalaβ20Updated 5 years ago
- Load numpy arrays and HDF5 files from VCF (variant call format)β31Updated 8 years ago
- Import and run CWL workflows on DNAnexus (alpha)β13Updated 7 years ago
- What's The Function of these genes?β22Updated 8 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.β34Updated 10 months ago
- Malleable All-seeing Journal Of Research Artifactsβ35Updated 2 years ago
- Collection of utilities for working with PacBio-based assembliesβ13Updated 2 years ago
- drunk on perbase pileups and lua expressionsβ19Updated 4 months ago
- FAstqc DAta PArser - A minimal parser to parse FastQC output data.β16Updated 9 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysisβ26Updated 3 years ago