Explore and analyze biological sequence data
☆17Aug 1, 2024Updated last year
Alternatives and similar repositories for smof
Users that are interested in smof are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simple Manipulation Of Trees☆13Aug 16, 2025Updated 9 months ago
- Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.☆15Dec 11, 2024Updated last year
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Jun 28, 2023Updated 2 years ago
- Simulate short-reads datasets using probabilistic models☆11Jun 1, 2013Updated 12 years ago
- Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.☆10Sep 13, 2011Updated 14 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- FAST: Fast Analysis of Sequences Toolbox☆32Oct 18, 2019Updated 6 years ago
- Rust UMI Directional Adjacency Deduplicator☆15Nov 25, 2019Updated 6 years ago
- Repository of common bioinformatics scripts☆39Sep 21, 2021Updated 4 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Feb 13, 2018Updated 8 years ago
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Jan 23, 2023Updated 3 years ago
- An R package for the Monte Carlo simulation of sequence evolution☆19May 6, 2014Updated 12 years ago
- A simple tool to calculate metrics from a BAM file and filter references with uneven coverages☆22Apr 24, 2026Updated last month
- Phylogenetic Likelihood Library 2 - experimental☆11May 12, 2025Updated last year
- Bedfile perturbation tool☆17Mar 6, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A protein language model for learning the SARS-CoV-2 fitness landscape☆13Apr 22, 2025Updated last year
- FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.☆14May 18, 2026Updated last week
- ☆23May 1, 2026Updated 3 weeks ago
- Bayesian analysis of MPRA and other high-throughput genomic assays☆10Jul 27, 2020Updated 5 years ago
- Python for Command Line Oneliners☆19Jan 5, 2015Updated 11 years ago
- Fast sequencing data quality metrics☆33Apr 21, 2026Updated last month
- The Adamant Programming Language Reference☆16Aug 23, 2020Updated 5 years ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- Ultrafast interval trees from the kernel. Deprecated in favor of the NCLS.☆26Apr 8, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 3 years ago
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- This is a repo for revising elements of "Interactive and Dynamic Graphics for Data Analysis".☆15May 17, 2026Updated last week
- L-system generators and visualizers☆33Nov 1, 2021Updated 4 years ago
- A file watcher written in Rust☆11May 4, 2026Updated 3 weeks ago
- A programming language.☆21Aug 28, 2017Updated 8 years ago
- A collection of CSV/TSV Utilities☆13Jun 2, 2020Updated 5 years ago
- Bam to Pandas DataFrame, quickly☆13May 10, 2025Updated last year
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding