Alternatives and similar repositories for sample-sheet:

Users that are interested in sample-sheet are comparing it to the libraries listed below

• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆97Updated 4 months ago
• cc2qe / vawk
  An awk-like VCF parser
  ☆56Updated last year
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆71Updated this week
• Cibiv / Teaser
  A tool to benchmark mappers and different parameters within minutes
  ☆44Updated 5 years ago
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆44Updated last year
• quinlan-lab / vcf2db
  create a gemini-compatible database from a VCF
  ☆56Updated 4 years ago
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆82Updated last week
• bow / crimson
  Bioinformatics tool outputs converter to JSON or YAML
  ☆36Updated 5 months ago
• brwnj / bcl2fastq
  NextSeq specific bcl2fastq2 wrapper.
  ☆53Updated 4 years ago
• lh3 / bgt
  Flexible genotype query among 30,000+ samples whole-genome
  ☆96Updated 5 years ago
• svviz / svviz
  Read visualizer for structural variants
  ☆82Updated 6 years ago
• galaxyproject / dunovo
  Reference-free duplex sequencing pipeline.
  ☆18Updated 2 years ago
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆30Updated 3 months ago
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆63Updated 2 weeks ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆44Updated last month
• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆70Updated 8 years ago
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆79Updated last week
• guyduche / Blast2Bam
  Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
  ☆46Updated 3 years ago
• brentp / duphold
  don't get DUP'ed or DEL'ed by your putative SVs.
  ☆105Updated 4 years ago
• refgenie / refgenie
  Reference genome resource manager
  ☆76Updated last year
• broadinstitute / viral-pipelines
  viral-ngs: complete pipelines
  ☆62Updated last week
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆62Updated 7 years ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆43Updated last year
• acg-team / tral
  Tandem Repeat Annotation Library
  ☆25Updated 2 years ago
• lh3 / fermi-lite
  Standalone C library for assembling Illumina short reads in small regions
  ☆72Updated 2 years ago
• mitenjain / nanopore
  UCSC Nanopore group's software pipeline for reference-based sequence analysis
  ☆54Updated 9 years ago
• igvteam / igv.js-flask
  Example project for integrating igv.js and flask
  ☆26Updated 7 months ago
• SciLifeLab / NGI-RNAseq
  Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
  ☆51Updated 6 years ago
• mozack / abra
  Assembly Based ReAligner
  ☆73Updated 6 years ago