Alternatives and similar repositories for sample-sheet

Users that are interested in sample-sheet are comparing it to the libraries listed below

• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆76Updated this week
• lh3 / fermi-lite
  Standalone C library for assembling Illumina short reads in small regions
  ☆72Updated 2 years ago
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• dpryan79 / libBigWig
  A C library for handling bigWig files
  ☆80Updated 6 months ago
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆122Updated 3 months ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 4 years ago
• slowkow / pytabix
  Retrieve data in genomic intervals with a Python interface for tabix.
  ☆82Updated 7 years ago
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated last year
• mdshw5 / simplesam
  Simple pure Python SAM parser and objects for working with SAM records
  ☆64Updated 3 years ago
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆97Updated 7 months ago
• chanzuckerberg / czid-dag
  Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.
  ☆27Updated 3 years ago
• brentp / pyfasta
  fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
  ☆87Updated 7 years ago
• bow / crimson
  Bioinformatics tool outputs converter to JSON or YAML
  ☆36Updated last month
• roryk / tiny-test-data
  Super small biological datasets for unit testing
  ☆61Updated 5 years ago
• brwnj / bcl2fastq
  NextSeq specific bcl2fastq2 wrapper.
  ☆55Updated 4 years ago
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆65Updated 2 months ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated this week
• mgymrek / pybamview
  Browser based application for viewing bam alignments
  ☆56Updated 8 years ago
• bcbio / bcbio.variation.recall
  Parallel merging, squaring off and ensemble calling for genomic variants
  ☆20Updated 5 years ago
• Clinical-Genomics / chanjo
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆51Updated 7 months ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 6 years ago
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆66Updated 4 months ago
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆45Updated last year
• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆72Updated 9 years ago
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆82Updated last month
• broadinstitute / cromshell
  CLI for interacting with Cromwell servers
  ☆55Updated last year
• broadinstitute / viral-pipelines
  viral-ngs: complete pipelines
  ☆65Updated last week
• refgenie / refgenie
  Reference genome resource manager
  ☆75Updated last year
• mbhall88 / taeper
  A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.
  ☆19Updated 7 years ago
• vsbuffalo / scythe
  A 3'-end adapter contaminant trimmer
  ☆95Updated 7 years ago