brentp / python-giggleLinks
python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.
☆16Updated 7 years ago
Alternatives and similar repositories for python-giggle
Users that are interested in python-giggle are comparing it to the libraries listed below
Sorting:
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 4 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Updated 7 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 11 months ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- Simplifies parallel processing of DNA sequencing reads☆9Updated 9 months ago
- Exon-exon splice junctions across SRA☆41Updated 3 years ago
- Core functionality of the CGAT code☆33Updated 5 months ago
- ☆25Updated 4 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- Genetics training camp☆21Updated 4 years ago
- ☆22Updated last year
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 7 months ago
- Differential Mutation Analysis☆11Updated 5 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- ☆29Updated last year
- Universal RObust Peak Annotator☆16Updated last year
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆22Updated 6 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Updated 4 months ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆27Updated 7 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year