brentp / python-giggle
python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.
☆16Updated 7 years ago
Alternatives and similar repositories for python-giggle
Users that are interested in python-giggle are comparing it to the libraries listed below
Sorting:
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Universal RObust Peak Annotator☆16Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Updated 7 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 9 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 2 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆22Updated 6 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- ☆29Updated 10 months ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated 11 months ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 5 years ago
- Simplifies parallel processing of DNA sequencing reads☆9Updated 7 months ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 6 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- This BLENDER has been sunsetted☆16Updated 7 months ago
- WES HLA Typing based on multiple alternative tools☆16Updated 4 years ago
- Exon-exon splice junctions across SRA☆40Updated 3 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago