brentp / python-giggleLinks
python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.
☆16Updated 7 years ago
Alternatives and similar repositories for python-giggle
Users that are interested in python-giggle are comparing it to the libraries listed below
Sorting:
- A Feature Density Estimator for High-Throughput Sequence Tags☆22Updated 4 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last month
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- ☆29Updated last year
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Updated 7 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆47Updated 3 years ago
- Genetics training camp☆21Updated 5 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 9 years ago
- Core functionality of the CGAT code☆33Updated 3 weeks ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 6 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 9 months ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 5 months ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆27Updated 7 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Updated 11 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆14Updated 2 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- ☆25Updated 4 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Updated 5 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 4 months ago
- ☆21Updated 8 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago