Differential expression analysis: DESeq2, edgeR, limma. Realized in python based on rpy2
☆15May 7, 2021Updated 5 years ago
Alternatives and similar repositories for DE_rpy2
Users that are interested in DE_rpy2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python implementation of edgeR for differential expression analysis☆105Mar 21, 2019Updated 7 years ago
- Python script to comvert Philips iSyntax files to OME-TIFF☆14Dec 30, 2022Updated 3 years ago
- This RNAseq data analysis tutorial is created for educational purpose☆36Feb 18, 2026Updated 5 months ago
- Supplementary files for our Aneuploidy Detection paper☆10Jul 5, 2018Updated 8 years ago
- ☆46Dec 11, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Colored Kimia Path24 Dataset: Configurations and Benchmarks with Deep Embeddings☆10Jun 6, 2024Updated 2 years ago
- Inspired from the paper "Show Attend and Tell". This project's aim was to train a neural network which can provide descriptive text for a…☆14Feb 7, 2021Updated 5 years ago
- 命例☆10Sep 27, 2018Updated 7 years ago
- Peak calling tool for CLIP-seq data☆14Apr 7, 2021Updated 5 years ago
- Android app saving RGB + Depth images with their ARPose of Huawei phones (Honor 20 View; Huawei P30 Pro...) with Tof sensor (using AREng…☆15Sep 8, 2021Updated 4 years ago
- Code accompanying the paper "Fighting Class Imbalance with Contrastive Learning" (MICCAI2021)☆10Nov 24, 2021Updated 4 years ago
- OnionNet-2 is constructed based on convolutional neural network (CNN) to predict the protein-ligand binding affinity.☆26Mar 2, 2024Updated 2 years ago
- DiffInfinite Official Code☆36Oct 30, 2024Updated last year
- Manipulate KEGG networks as NetworkX objects in in Python☆10Jan 21, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 6 years ago
- Simple scVI implementation☆13Updated this week
- OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning …☆36Jul 21, 2026Updated 3 weeks ago
- ☆16May 25, 2023Updated 3 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆38Nov 8, 2017Updated 8 years ago
- Implementation of Stochastic Depth Networks in Keras☆13Sep 10, 2016Updated 9 years ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆16Apr 13, 2026Updated 4 months ago
- ☆10Feb 3, 2020Updated 6 years ago
- ☆11Sep 22, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 7 years ago
- [Findings of ACL-2023] This is the official implementation of On the Difference of BERT-style and CLIP-style Text Encoders.☆14Jun 7, 2023Updated 3 years ago
- Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage se…☆18Oct 10, 2022Updated 3 years ago
- 🔬 Code-free deep segmentation for computational pathology☆58Jun 14, 2024Updated 2 years ago
- SSR: A Unifed Framework for Prediction in Secondary Structure of RNA. 整合了LinearFold, E2Efold, MXfold2算法, 包含数据集,欢迎一键使用。☆10Dec 31, 2021Updated 4 years ago
- Code for "Random Features Strengthen Graph Neural Networks" (SDM 2021)☆22Jan 18, 2021Updated 5 years ago
- Supervised Dimensionality Reduction and Classification with Convolutional Autoencoders☆11Nov 4, 2022Updated 3 years ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆14Feb 7, 2024Updated 2 years ago
- This repository contains the all my ML KIT projects using flutter.☆14Oct 10, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- VEGA: VAE Enhanced by Gene Annotations☆18May 5, 2022Updated 4 years ago
- iSyntax to raw format converter☆24Nov 26, 2025Updated 8 months ago
- A Data Visualization project on the French traffic accidents database☆19Aug 27, 2019Updated 6 years ago
- Custom Keras Callbacks for Feature Visualization, Class Activation Map, Grad-CAM☆16Apr 28, 2021Updated 5 years ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆14Jul 31, 2015Updated 11 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆39Aug 7, 2026Updated last week
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆17Apr 14, 2025Updated last year