Differential expression analysis: DESeq2, edgeR, limma. Realized in python based on rpy2
☆15May 7, 2021Updated 5 years ago
Alternatives and similar repositories for DE_rpy2
Users that are interested in DE_rpy2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python implementation of edgeR for differential expression analysis☆105Mar 21, 2019Updated 7 years ago
- ☆13Apr 8, 2023Updated 3 years ago
- Python script to comvert Philips iSyntax files to OME-TIFF☆14Dec 30, 2022Updated 3 years ago
- Literature reviews of (Unsupervised/self-supervised) pretraining on medical datasets☆18Jan 16, 2024Updated 2 years ago
- This RNAseq data analysis tutorial is created for educational purpose☆36Feb 18, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Interpretable bimodal network for transcription factors binding site prediction☆10Jun 29, 2023Updated 3 years ago
- This repository contains python implementations of statistical tests.☆12Aug 17, 2023Updated 3 years ago
- Codebase for the domain adaptation (cross-species TF binding prediction) project.☆12Aug 29, 2022Updated 4 years ago
- Brief tutorial illustrating gprof and AMD uProf☆10Aug 8, 2024Updated 2 years ago
- Supplementary files for our Aneuploidy Detection paper☆10Jul 5, 2018Updated 8 years ago
- ☆46Dec 11, 2024Updated last year
- Colored Kimia Path24 Dataset: Configurations and Benchmarks with Deep Embeddings☆10Jun 6, 2024Updated 2 years ago
- 命例☆10Sep 27, 2018Updated 7 years ago
- Peak calling tool for CLIP-seq data☆14Apr 7, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Download ABIDE I and ABIDE II dataset☆13May 12, 2021Updated 5 years ago
- Code accompanying the paper "Fighting Class Imbalance with Contrastive Learning" (MICCAI2021)☆10Nov 24, 2021Updated 4 years ago
- DiffInfinite Official Code☆36Oct 30, 2024Updated last year
- The snakemake interface, currently works like a notebook (under development)☆20Mar 12, 2026Updated 6 months ago
- Manipulate KEGG networks as NetworkX objects in in Python☆10Jan 21, 2022Updated 4 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 6 years ago
- Simple scVI implementation☆13Aug 31, 2026Updated 3 weeks ago
- ☆15May 25, 2023Updated 3 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆38Nov 8, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Implementation of Stochastic Depth Networks in Keras☆13Sep 10, 2016Updated 10 years ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆16Apr 13, 2026Updated 5 months ago
- ☆11Sep 22, 2021Updated 5 years ago
- Python for research, Course 2021 Autumn☆12Dec 15, 2021Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 7 years ago
- [Findings of ACL-2023] This is the official implementation of On the Difference of BERT-style and CLIP-style Text Encoders.☆14Jun 7, 2023Updated 3 years ago
- Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage se…☆19Oct 10, 2022Updated 3 years ago
- ☆13Apr 1, 2023Updated 3 years ago
- SSR: A Unifed Framework for Prediction in Secondary Structure of RNA. 整合了LinearFold, E2Efold, MXfold2算法,包含数据集,欢迎一键使用。☆10Dec 31, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Supervised Dimensionality Reduction and Classification with Convolutional Autoencoders☆11Nov 4, 2022Updated 3 years ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆14Feb 7, 2024Updated 2 years ago
- VEGA: VAE Enhanced by Gene Annotations☆18May 5, 2022Updated 4 years ago
- ☆12Feb 10, 2023Updated 3 years ago
- iSyntax to raw format converter☆24Nov 26, 2025Updated 9 months ago
- A Data Visualization project on the French traffic accidents database☆19Aug 27, 2019Updated 7 years ago
- Custom Keras Callbacks for Feature Visualization, Class Activation Map, Grad-CAM☆16Apr 28, 2021Updated 5 years ago