Differential expression analysis: DESeq2, edgeR, limma. Realized in python based on rpy2
☆15May 7, 2021Updated 5 years ago
Alternatives and similar repositories for DE_rpy2
Users that are interested in DE_rpy2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Apr 8, 2023Updated 3 years ago
- A Python implementation of edgeR for differential expression analysis☆105Mar 21, 2019Updated 7 years ago
- Python script to comvert Philips iSyntax files to OME-TIFF☆14Dec 30, 2022Updated 3 years ago
- Literature reviews of (Unsupervised/self-supervised) pretraining on medical datasets☆17Jan 16, 2024Updated 2 years ago
- This RNAseq data analysis tutorial is created for educational purpose☆37Feb 18, 2026Updated 8 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Interpretable bimodal network for transcription factors binding site prediction☆10Jun 29, 2023Updated 3 years ago
- Codebase for the domain adaptation (cross-species TF binding prediction) project.☆12Aug 29, 2022Updated 4 years ago
- ☆46Dec 11, 2024Updated last year
- 命例☆10Sep 27, 2018Updated 8 years ago
- Inspired from the paper "Show Attend and Tell". This project's aim was to train a neural network which can provide descriptive text for a…☆15Feb 7, 2021Updated 5 years ago
- Processing and analysis of proteomics data☆18Updated this week
- Peak calling tool for CLIP-seq data☆14Apr 7, 2021Updated 5 years ago
- Normalization methods for RNA-Seq expression data in Python.☆11Jan 7, 2015Updated 11 years ago
- DiffInfinite Official Code☆36Oct 30, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- [MICCAI'20] MIA-Prognosis: A Deep Learning Framework to Predict Therapy Response☆10Nov 8, 2020Updated 5 years ago
- Gene- and Pathway-based Framework for Multi-omics Data Intergration☆10Jan 21, 2022Updated 4 years ago
- Simulation tool for ChIP- and other -seq experiments☆14Mar 13, 2023Updated 3 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆14Mar 31, 2020Updated 6 years ago
- ☆15May 25, 2023Updated 3 years ago
- Deep Learning for Kidney Histologic Primitives (U-Net implementation in PyTorch)☆11Jan 13, 2021Updated 5 years ago
- OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning …☆36Updated this week
- Simple scVI implementation☆13Oct 19, 2026Updated 2 weeks ago
- svelte-dashboard is a Gridstack.js Svelte wrapper that seamlessly integrates with Svelte 5, allowing you to use it as a native component …☆12Nov 16, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Jul 3, 2023Updated 3 years ago
- Implementation of Stochastic Depth Networks in Keras☆13Sep 10, 2016Updated 10 years ago
- ☆11Sep 22, 2021Updated 5 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- Supervised Dimensionality Reduction and Classification with Convolutional Autoencoders☆11Nov 4, 2022Updated 3 years ago
- SSR: A Unifed Framework for Prediction in Secondary Structure of RNA. 整合了LinearFold, E2Efold, MXfold2算法，包含数据集，欢迎一键使用。☆10Dec 31, 2021Updated 4 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Sep 2, 2026Updated 2 months ago
- An example of how to stream large files to S3 from an external source on AWS Lambda using the JavaScript AWS SDK v3☆18Apr 10, 2025Updated last year
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆16Apr 13, 2026Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Custom Keras Callbacks for Feature Visualization, Class Activation Map, Grad-CAM☆16Apr 28, 2021Updated 5 years ago
- 生物信息学入门的系列课程，包括Linux, shell, Python 编程，建库测序，基因组学，以及系统进化，常用软件使用等内容。☆24Sep 16, 2021Updated 5 years ago
- SIMPLE: A Gradient Estimator for $k$-subset Sampling☆11Aug 8, 2024Updated 2 years ago
- RAPID: a Real-time, GPU-Accelerated Parallelized Image processing software for large-scale multiplexed fluorescence microscopy Data☆12Dec 3, 2022Updated 3 years ago
- ☆13Apr 1, 2023Updated 3 years ago
- ☆11Sep 2, 2026Updated 2 months ago
- Code for "Random Features Strengthen Graph Neural Networks" (SDM 2021)☆22Jan 18, 2021Updated 5 years ago