An extensible python-based genomics visualization engine
☆144Aug 11, 2023Updated 2 years ago
Alternatives and similar repositories for genomeview
Users that are interested in genomeview are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- horizontal pileup☆16Nov 11, 2022Updated 3 years ago
- Plot structural variant signals from many BAMs and CRAMs☆564Jul 13, 2024Updated last year
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- Validate and edit small eukaryotic genome assemblies☆32Apr 28, 2023Updated 2 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Apr 22, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆116Feb 12, 2026Updated 2 months ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 7 years ago
- kaamer - protein identification based on amino acid kmers☆12Mar 7, 2023Updated 3 years ago
- expressions on VCFs☆91Mar 17, 2026Updated 3 weeks ago
- genetic variant expressions, annotation, and filtering for great good.☆274Dec 15, 2025Updated 4 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 2 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆308Updated this week
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated last year
- Python bindings to minimap2☆16Sep 18, 2017Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- vembrane filters VCF records using python expressions☆69Updated this week
- nim wrapper for htslib for parsing genomics data files☆158Mar 31, 2026Updated 2 weeks ago
- Quickly calculate and visualize sequence coverage in alignment files☆100Jun 22, 2019Updated 6 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆870Jul 10, 2024Updated last year
- De novo genome assembly and multisample variant calling☆112Mar 28, 2019Updated 7 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Structural variant toolkit for VCFs☆404Mar 21, 2026Updated 3 weeks ago
- Performant Pythonic GenomicRanges☆494Jan 27, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- A declarative interactive genomics visualization library for Python.☆243Nov 24, 2025Updated 4 months ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆406Apr 1, 2026Updated 2 weeks ago
- linearize and simplify variation graphs using blocked partial order alignment☆62Mar 31, 2026Updated 2 weeks ago
- ⛓ Correct misassemblies using linked AND long reads☆63Mar 24, 2026Updated 3 weeks ago
- ☆125Aug 1, 2025Updated 8 months ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- cython + htslib == fast VCF and BCF processing☆440Feb 23, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- seqfu - Sequece Fastx Utilities☆127Mar 3, 2026Updated last month
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- A genome browser designed for complex structural variants and long reads.☆300Jun 6, 2025Updated 10 months ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- Python library to plot DNA sequence features (e.g. from Genbank files)☆686Jul 2, 2025Updated 9 months ago
- Fast and accurate genomic distances using HyperLogLog☆163Jan 19, 2023Updated 3 years ago