An extensible python-based genomics visualization engine
☆145Aug 11, 2023Updated 3 years ago
Alternatives and similar repositories for genomeview
Users that are interested in genomeview are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bam Read Index - Extract alignments from a bam file by readname☆29Apr 22, 2024Updated 2 years ago
- Plot structural variant signals from many BAMs and CRAMs☆574Jul 13, 2024Updated 2 years ago
- maze: match visualizer☆10Oct 11, 2021Updated 5 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- horizontal pileup☆16Sep 1, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- vembrane filters, sorts, and transforms VCF records using python expressions☆71Updated this week
- genetic variant expressions, annotation, and filtering for great good.☆274May 12, 2026Updated 5 months ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆102Jun 22, 2019Updated 7 years ago
- expressions on VCFs☆95Sep 25, 2026Updated last month
- python module to plot beautiful and highly customizable genome browser tracks☆907Oct 3, 2026Updated last month
- nim wrapper for htslib for parsing genomics data files☆159Sep 30, 2026Updated last month
- Validate and edit small eukaryotic genome assemblies☆33Apr 28, 2023Updated 3 years ago
- A declarative interactive genomics visualization library for Python.☆242Nov 24, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆343Oct 23, 2026Updated 2 weeks ago
- Resource of human chromosome schematics & images☆96Sep 4, 2024Updated 2 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆16Aug 1, 2026Updated 3 months ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆437Sep 2, 2026Updated 2 months ago
- Performant Pythonic GenomicRanges☆492Oct 27, 2026Updated last week
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- De novo genome assembly and multisample variant calling☆113Mar 28, 2019Updated 7 years ago
- A genome browser designed for complex structural variants and long reads.☆307Updated this week
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆59Feb 17, 2022Updated 4 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆124Jan 18, 2021Updated 5 years ago
- cython + htslib == fast VCF and BCF processing☆451Updated this week
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- kaamer - protein identification based on amino acid kmers☆11Mar 7, 2023Updated 3 years ago
- Structural variant toolkit for VCFs☆428Oct 3, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- for visual evaluation of read support for structural variation☆56Jun 4, 2024Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- Generate interactive dotplot from mummer4 output using plotly☆28Feb 29, 2020Updated 6 years ago
- Python bindings to minimap2☆16Sep 18, 2017Updated 9 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆147Aug 24, 2025Updated last year
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆125Apr 20, 2026Updated 6 months ago