Alternatives and similar repositories for genomeview:

Users that are interested in genomeview are comparing it to the libraries listed below

• brentp / smoove
  structural variant calling and genotyping with existing tools, but, smoothly.
  ☆240Updated 7 months ago
• brentp / jigv
  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
  ☆126Updated last year
• vibansal / HapCUT2
  software tools for haplotype assembly from sequence data
  ☆214Updated 5 months ago
• alimanfoo / pysamstats
  A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …
  ☆193Updated 2 weeks ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆140Updated 2 months ago
• dpryan79 / MethylDackel
  A (mostly) universal methylation extractor for BS-seq experiments.
  ☆168Updated 6 months ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆145Updated 3 months ago
• Illumina / paragraph
  Graph realignment tools for structural variants
  ☆156Updated 2 years ago
• DecodeGenetics / graphtyper
  Population-scale genotyping using pangenome graphs
  ☆177Updated last week
• walaj / svaba
  Structural variation and indel detection by local assembly
  ☆239Updated last month
• tleonardi / nanocompore
  RNA modifications detection from Nanopore dRNA-Seq data
  ☆81Updated 11 months ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆182Updated 8 months ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆136Updated this week
• hall-lab / svtyper
  Bayesian genotyper for structural variants
  ☆127Updated 3 years ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆137Updated last year
• ablab / IsoQuant
  Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
  ☆154Updated this week
• AndersenLab / VCF-kit
  VCF-kit: Assorted utilities for the variant call format
  ☆126Updated 5 months ago
• haowenz / chromap
  Fast alignment and preprocessing of chromatin profiles
  ☆195Updated last month
• ComparativeGenomicsToolkit / hal
  Hierarchical Alignment Format
  ☆166Updated 2 weeks ago
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆197Updated 2 years ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆108Updated this week
• davetang / learning_bam_file
  Learning the Sequence Alignment/Map format
  ☆111Updated 9 months ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 3 years ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆155Updated last year
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆273Updated 3 months ago
• PacificBiosciences / ccs
  CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
  ☆117Updated 10 months ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• lgmgeo / AnnotSV
  Annotation and Ranking of Structural Variation
  ☆228Updated this week
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆208Updated 6 months ago
• Dfam-consortium / RepeatModeler
  De-Novo Repeat Discovery Tool
  ☆199Updated last week