ircflagship2 / pypeLinks
Python for Command Line Oneliners
β19Updated 11 years ago
Alternatives and similar repositories for pype
Users that are interested in pype are comparing it to the libraries listed below
Sorting:
- Lab notebook for people who like the command line.β11Updated last year
- π― Generate DNA sequences with specified amino acid, codon, and k-mer frequenciesβ17Updated 3 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Pythonβ21Updated 2 years ago
- Tool to easily start up an IPython cluster on different schedulers.β146Updated 5 years ago
- python stuff I useβ19Updated 6 years ago
- A command line tool that uses a Boolean calculus of calendars for computing availability (currently supports Google Calendar API)β25Updated 4 years ago
- Docker containers that demonstrate a proof of concept bwa alignment workflowβ14Updated 11 years ago
- High throughput, pain-free big data pipelines.β30Updated 8 years ago
- Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressioβ¦β24Updated 9 months ago
- Python-based UCSC genome browser snapshot-taker and gallery-makerβ12Updated last year
- A Python library to work with high-throughput sequencing data in the context of data integrationβ14Updated 8 years ago
- A tool for running bioinformatics workflows locally or in the cloud.β30Updated 6 years ago
- Efficient storage of same-type, uneven-size arraysβ12Updated 7 years ago
- Find target sites for the miRNAs in genomic sequencesβ18Updated 8 years ago
- Library for visualising genomic features in Python.β15Updated 8 years ago
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algebβ¦β23Updated last year
- Trigger the Google Genomics Pipeline API with CWLβ11Updated 8 years ago
- Write-once-read-many table for large datasets.β27Updated 2 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics dataβ18Updated 9 years ago
- Let you apply a Python expression to a command output like Perl or Awk would doβ94Updated 5 years ago
- Abbreviate strings to short, unique identifiersβ24Updated 3 years ago
- β12Updated 8 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.β15Updated 7 years ago
- A light-weight HTML lab notebook generatorβ18Updated 2 years ago
- Python Optimal Leaf Ordering for Hierarchical Clusteringβ21Updated 8 years ago
- a python library for working with flow cytometry data.β14Updated 10 years ago
- CGAT-ruffus is a lightweight python module for running computational pipelinesβ175Updated 4 years ago
- Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.β16Updated 10 years ago
- Flexible omics pipelineβ17Updated 3 months ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.β11Updated 8 years ago