biocore-ntnu / kerneltreeLinks
Ultrafast interval trees from the kernel. Deprecated in favor of the NCLS.
☆25Updated 6 years ago
Alternatives and similar repositories for kerneltree
Users that are interested in kerneltree are comparing it to the libraries listed below
Sorting:
- NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.☆223Updated 4 months ago
- fast, pure-python interval overlap testing☆52Updated 5 years ago
- Augmented Interval Tree implemented in Cython/C☆20Updated 10 months ago
- a cythonized, extended version of the interval search tree in bx☆30Updated 6 years ago
- 📊 A working, maintained copy of ggpy☆31Updated 6 years ago
- Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots☆32Updated 3 years ago
- CGAT-ruffus is a lightweight python module for running computational pipelines☆175Updated 4 years ago
- Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressio…☆23Updated 6 months ago
- A command line tool that uses a Boolean calculus of calendars for computing availability (currently supports Google Calendar API)☆25Updated 4 years ago
- Configure workflow/pipeline tests using yaml files.☆70Updated last year
- A cross-compatible CLI and Python API for accessing block and object storage☆35Updated last year
- Open compressed files in Python☆80Updated last month
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Updated 2 years ago
- Tool to easily start up an IPython cluster on different schedulers.☆147Updated 5 years ago
- This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.☆20Updated 7 years ago
- WDL plugin for pytest☆48Updated 2 years ago
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Updated 4 years ago
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement☆29Updated 5 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated 2 years ago
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Updated 8 years ago
- Efficient storage of same-type, uneven-size arrays☆12Updated 7 years ago
- Lab notebook for people who like the command line.☆11Updated last year
- A tool for generating heatmaps from hierarchically clustered data.☆40Updated 7 years ago
- requirements, examples, and tests for expression matrix file formats☆22Updated 7 years ago
- Python Optimal Leaf Ordering for Hierarchical Clustering☆21Updated 8 years ago
- Slides and demos from our SciPyConf 2019 talk☆13Updated 4 years ago
- Python for Command Line Oneliners☆19Updated 10 years ago
- Plot categorical heatmaps with seaborn☆18Updated 3 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Updated 9 years ago
- High throughput, pain-free big data pipelines.☆30Updated 8 years ago