biocore-ntnu / kerneltreeLinks
Ultrafast interval trees from the kernel. Deprecated in favor of the NCLS.
β26Updated 6 years ago
Alternatives and similar repositories for kerneltree
Users that are interested in kerneltree are comparing it to the libraries listed below
Sorting:
- NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.β224Updated 6 months ago
- π A working, maintained copy of ggpyβ31Updated 6 years ago
- Augmented Interval Tree implemented in Cython/Cβ20Updated 11 months ago
- fast, pure-python interval overlap testingβ52Updated 5 years ago
- Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressioβ¦β24Updated 8 months ago
- Jupyter Notebooks and other code for Altair-based Interactive UpSet Plotsβ31Updated 4 years ago
- Open compressed files in Pythonβ80Updated 2 months ago
- a cythonized, extended version of the interval search tree in bxβ30Updated 6 years ago
- This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.β20Updated 7 years ago
- Lab notebook for people who like the command line.β11Updated last year
- Plot categorical heatmaps with seabornβ18Updated 3 years ago
- π― Generate DNA sequences with specified amino acid, codon, and k-mer frequenciesβ17Updated 2 years ago
- Efficient storage of same-type, uneven-size arraysβ12Updated 7 years ago
- A cross-compatible CLI and Python API for accessing block and object storageβ35Updated this week
- Simple installer for conda (and conda-likes)β17Updated last month
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)β15Updated 4 years ago
- Configure workflow/pipeline tests using yaml files.β71Updated last year
- Tool to easily start up an IPython cluster on different schedulers.β146Updated 5 years ago
- A multi-threading implement of Python gzip moduleβ57Updated 2 years ago
- β26Updated last year
- β21Updated 2 years ago
- Useful Mutable Mappingsβ72Updated 2 years ago
- A Jupyter wrapper for the igv.js library (representation of genomic data)β26Updated 4 years ago
- SVG path parser for matplotlibβ67Updated 3 years ago
- requirements, examples, and tests for expression matrix file formatsβ22Updated 7 years ago
- WDL plugin for pytestβ49Updated 2 years ago
- Generate identicons for DNA sequences with Pythonβ38Updated 7 months ago
- Super-fast and clean conversions to numbers for Python.β110Updated 10 months ago
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Dataβ17Updated 2 years ago
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirementβ30Updated 5 years ago