Ultrafast interval trees from the kernel. Deprecated in favor of the NCLS.
☆26Apr 8, 2019Updated 7 years ago
Alternatives and similar repositories for kerneltree
Users that are interested in kerneltree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.☆223Jul 4, 2025Updated 10 months ago
- Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.☆10Sep 13, 2011Updated 14 years ago
- Explore and analyze biological sequence data☆17Aug 1, 2024Updated last year
- a cythonized, extended version of the interval search tree in bx☆30Jun 4, 2019Updated 6 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Feb 13, 2018Updated 8 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Jan 23, 2023Updated 3 years ago
- Bedfile perturbation tool☆17Mar 6, 2026Updated 2 months ago
- Library for visualising genomic features in Python.☆15May 12, 2017Updated 9 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 6 years ago
- Python for Command Line Oneliners☆19Jan 5, 2015Updated 11 years ago
- A file watcher written in Rust☆11May 4, 2026Updated 3 weeks ago
- Published methods☆15Oct 19, 2016Updated 9 years ago
- Bam to Pandas DataFrame, quickly☆13May 10, 2025Updated last year
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Nov 21, 2018Updated 7 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 5 months ago
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12May 21, 2024Updated 2 years ago
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated 2 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated this week
- 📊 A working, maintained copy of ggpy☆31Jul 11, 2019Updated 6 years ago
- pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …☆19Apr 14, 2026Updated last month
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 2 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 2 months ago
- Genomic Association Tester☆35May 2, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 4 months ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 5 months ago
- Java Bindings (JNI) for bwa☆20Dec 15, 2016Updated 9 years ago
- zsh plugin to list up EC2 instances and ssh login the instances.☆11Apr 10, 2018Updated 8 years ago
- Test whether the "focus" mechanism is a valuable addition to attention☆12Dec 8, 2022Updated 3 years ago
- A phase-aware pharmacogenomic diplotyper for PacBio datasets☆21Mar 24, 2026Updated 2 months ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆70Feb 10, 2020Updated 6 years ago
- Draw a dot plot from a paf alignment☆42May 9, 2026Updated 3 weeks ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Pyranges: a Python framework for ultrafast sequence interval operations☆56Apr 21, 2026Updated last month
- The BES framework, which forms the basis for the Hyrax server☆16May 21, 2026Updated last week
- fast, pure-python interval overlap testing☆52Oct 2, 2020Updated 5 years ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- ☆10Sep 30, 2018Updated 7 years ago
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- Cromwell output organizer☆13May 18, 2021Updated 5 years ago