A python extension for quick access to bigWig and bigBed files
☆244Jan 14, 2026Updated 4 months ago
Alternatives and similar repositories for pyBigWig
Users that are interested in pyBigWig are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 10 years ago
- A cool place to store your Hi-C☆240Jun 1, 2026Updated last week
- python module to plot beautiful and highly customizable genome browser tracks☆887Jul 10, 2024Updated last year
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 10 years ago
- Tools to process and analyze deep sequencing data.☆761Jul 23, 2025Updated 10 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Apr 20, 2026Updated last month
- Jupyter notebook based genomic data visualization toolkit.☆257May 25, 2026Updated 2 weeks ago
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated last year
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆92Jan 28, 2025Updated last year
- Genomic interval operations on Pandas DataFrames☆191Jun 1, 2026Updated last week
- Python bindings to UCSC BigWig and BigBed library☆36Apr 6, 2026Updated 2 months ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆273Jul 17, 2025Updated 10 months ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆91Sep 24, 2025Updated 8 months ago
- A tool for bigWig files.☆118May 23, 2018Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A C library for handling bigWig files☆81Jan 17, 2025Updated last year
- Fast, flexible and extensible genome browser.☆340May 15, 2026Updated 3 weeks ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 5 months ago
- Performant Pythonic GenomicRanges☆494Apr 23, 2026Updated last month
- genes and genomes at your fingertips☆413Mar 5, 2026Updated 3 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆58Jan 24, 2026Updated 4 months ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆330Mar 16, 2025Updated last year
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Apr 3, 2020Updated 6 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆133Feb 3, 2026Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆82Oct 31, 2024Updated last year
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆99Mar 1, 2025Updated last year
- Fast alignment and preprocessing of chromatin profiles☆222Mar 20, 2026Updated 2 months ago
- The tools for your .cool's☆166Mar 19, 2026Updated 2 months ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- MACS -- Model-based Analysis of ChIP-Seq☆776May 6, 2026Updated last month
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12May 21, 2024Updated 2 years ago
- code to run sei and obtain sei and sequence class predictions☆115Dec 20, 2022Updated 3 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 8 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- a minimal, scriptable genome browser for python