deeptools / pyBigWigLinks
A python extension for quick access to bigWig and bigBed files
☆231Updated 4 months ago
Alternatives and similar repositories for pyBigWig
Users that are interested in pyBigWig are comparing it to the libraries listed below
Sorting:
- Application for making ENCODE Blacklists☆309Updated 4 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆249Updated 6 months ago
- A short tutorial on how to use RSEM☆136Updated 5 years ago
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆191Updated 2 weeks ago
- ATAC-seq and DNase-seq processing pipeline☆165Updated 2 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆182Updated last year
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆158Updated 2 weeks ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆215Updated 4 months ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆216Updated last year
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆329Updated 3 months ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆280Updated 10 months ago
- parallel fastq-dump wrapper☆295Updated 2 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- Precision HLA typing from next-generation sequencing data☆199Updated last year
- SUPPA: Fast quantification of splicing and differential splicing☆275Updated 11 months ago
- ATAC-seq peak-calling and QC analysis pipeline☆201Updated 3 weeks ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆167Updated this week
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆406Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆124Updated 5 years ago
- [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data☆138Updated last year
- ☆261Updated 6 months ago
- Single-Cell Genotyping Tool☆206Updated last year
- Quick mining and visualization of NGS data by integrating genomic databases☆265Updated 2 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆241Updated 7 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆226Updated this week
- ☆151Updated 2 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆102Updated 6 months ago
- TCR and BCR assembly from RNA-seq data☆310Updated this week
- RNA-seq workflow using STAR and DESeq2☆341Updated 10 months ago
- GTEx & TOPMed data production and analysis pipelines☆369Updated 2 weeks ago