deeptools / pyBigWigLinks
A python extension for quick access to bigWig and bigBed files
☆234Updated 9 months ago
Alternatives and similar repositories for pyBigWig
Users that are interested in pyBigWig are comparing it to the libraries listed below
Sorting:
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆196Updated 4 months ago
- Application for making ENCODE Blacklists☆324Updated 4 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆256Updated 3 months ago
- Jupyter notebook based genomic data visualization toolkit.☆247Updated last week
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆239Updated 4 months ago
- SUPPA: Fast quantification of splicing and differential splicing☆281Updated last year
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆326Updated 7 months ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆344Updated last week
- ATAC-seq and DNase-seq processing pipeline☆166Updated 3 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆128Updated 5 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆286Updated last year
- [Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing data☆140Updated last year
- TCR and BCR assembly from RNA-seq data