A python extension for quick access to bigWig and bigBed files
☆252Sep 14, 2026Updated 3 weeks ago
Alternatives and similar repositories for pyBigWig
Users that are interested in pyBigWig are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 10 years ago
- A cool place to store your Hi-C☆245Updated this week
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 10 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆904Oct 3, 2026Updated last week
- Tools to process and analyze deep sequencing data.☆768Sep 27, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆40Sep 15, 2026Updated 3 weeks ago
- Jupyter notebook based genomic data visualization toolkit.☆261Sep 22, 2026Updated 2 weeks ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆85Aug 25, 2020Updated 6 years ago
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated 2 years ago
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆94Jan 28, 2025Updated last year
- Genomic interval operations on Pandas DataFrames☆196Sep 7, 2026Updated last month
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆94Oct 2, 2026Updated last week
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆279Sep 24, 2026Updated 2 weeks ago
- Python bindings to UCSC BigWig and BigBed library☆37Sep 14, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A tool for bigWig files.☆119May 23, 2018Updated 8 years ago
- A C library for handling bigWig files☆83Sep 14, 2026Updated 3 weeks ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Apr 3, 2020Updated 6 years ago
- Fast, flexible and extensible genome browser.☆343Jun 17, 2026Updated 3 months ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 9 months ago
- Performant Pythonic GenomicRanges☆490Sep 23, 2026Updated 2 weeks ago
- genes and genomes at your fingertips☆410Jun 9, 2026Updated 4 months ago
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12May 21, 2024Updated 2 years ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆330Aug 26, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Extract 3D contacts (.pairs) from sequencing alignments☆138Jul 29, 2026Updated 2 months ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆82Oct 31, 2024Updated last year
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆104Mar 1, 2025Updated last year
- Fast alignment and preprocessing of chromatin profiles☆229Mar 20, 2026Updated 6 months ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- The tools for your .cool's☆171Mar 19, 2026Updated 6 months ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- code to run sei and obtain sei and sequence class predictions☆118Dec 20, 2022Updated 3 years ago
- MACS -- Model-based Analysis of ChIP-Seq☆787Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Sequential regulatory activity predictions with deep convolutional neural networks.☆475Jan 15, 2026Updated 8 months ago
- a minimal, scriptable genome browser for python☆55Dec 20, 2024Updated last year
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 9 years ago
- Interval data structure☆235Mar 18, 2026Updated 6 months ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆186Mar 19, 2026Updated 6 months ago
- Log command line events to a graph database :)☆13Mar 12, 2016Updated 10 years ago