deeptools / pyBigWigLinks
A python extension for quick access to bigWig and bigBed files
☆232Updated 5 months ago
Alternatives and similar repositories for pyBigWig
Users that are interested in pyBigWig are comparing it to the libraries listed below
Sorting:
- Application for making ENCODE Blacklists☆313Updated 4 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆250Updated this week
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆191Updated this week
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆216Updated this week
- A short tutorial on how to use RSEM☆136Updated 5 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆219Updated last year
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆332Updated 4 months ago
- ATAC-seq and DNase-seq processing pipeline☆166Updated 3 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆275Updated last year
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆409Updated last year
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆124Updated 5 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆205Updated 3 weeks ago
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆160Updated 3 weeks ago
- ☆151Updated 2 years ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆168Updated this week
- Precision HLA typing from next-generation sequencing data☆199Updated last year
- GTEx & TOPMed data production and analysis pipelines☆372Updated 3 weeks ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆232Updated last month
- Quick mining and visualization of NGS data by integrating genomic databases☆265Updated 2 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Updated 3 weeks ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆281Updated 11 months ago
- parallel fastq-dump wrapper☆297Updated 2 years ago
- ☆263Updated 7 months ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆185Updated last year
- Single-Cell Genotyping Tool☆208Updated last year
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆227Updated this week
- A collection of scripts and notes related to genomics and bioinformatics☆213Updated 2 months ago
- predicting expression effects of human genome variants ab initio from sequence☆128Updated 4 months ago
- ☆138Updated 6 years ago