deeptools / pyBigWigLinks
A python extension for quick access to bigWig and bigBed files
☆239Updated last week
Alternatives and similar repositories for pyBigWig
Users that are interested in pyBigWig are comparing it to the libraries listed below
Sorting:
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆201Updated last month
- Application for making ENCODE Blacklists☆331Updated 4 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆263Updated 6 months ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆348Updated last month
- Jupyter notebook based genomic data visualization toolkit.☆249Updated last month
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆173Updated 2 weeks ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆246Updated 6 months ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆328Updated 10 months ago
- Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.☆207Updated 7 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆237Updated last month
- SUPPA: Fast quantification of splicing and differential splicing☆292Updated 2 months ago
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- ATAC-seq and DNase-seq processing pipeline☆165Updated 3 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆222Updated 2 months ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆288Updated last year
- [Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing data☆142Updated last year
- parallel fastq-dump wrapper☆302Updated 2 years ago
- TCR and BCR assembly from RNA-seq data☆338Updated this week
- Precision HLA typing from next-generation sequencing data☆205Updated last year
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆185Updated last week
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆128Updated 5 years ago
- GTEx & TOPMed data production and analysis pipelines☆392Updated 4 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆218Updated last month
- Performant Pythonic GenomicRanges☆493Updated 2 weeks ago
- The tools for your .cool's☆159Updated 6 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆124Updated 5 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated 7 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆396Updated last week
- ☆286Updated 3 months ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆197Updated last year