Alternatives and similar repositories for pyBigWig

Users that are interested in pyBigWig are comparing it to the libraries listed below

• mdozmorov / HiC_data
  A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.
  ☆192Updated 2 months ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆317Updated 4 years ago
• broadinstitute / ABC-Enhancer-Gene-Prediction
  Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
  ☆236Updated 2 months ago
• deeptools / HiCExplorer
  HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
  ☆256Updated last month
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆338Updated this week
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆138Updated 5 years ago
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆224Updated this week
• mikessh / vdjtools
  [Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing data
  ☆141Updated last year
• ANHIG / IMGTHLA
  Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
  ☆236Updated last month
• liulab-dfci / TRUST4
  TCR and BCR assembly from RNA-seq data
  ☆323Updated 3 weeks ago
• daler / pybedtools
  Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
  ☆323Updated 5 months ago
• comprna / SUPPA
  SUPPA: Fast quantification of splicing and differential splicing
  ☆279Updated last year
• kundajelab / atac_dnase_pipelines
  ATAC-seq and DNase-seq processing pipeline
  ☆166Updated 3 years ago
• FunctionLab / ExPecto
  predicting expression effects of human genome variants ab initio from sequence
  ☆131Updated 7 months ago
• sdparekh / zUMIs
  zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
  ☆283Updated last year
• igordot / genomics
  A collection of scripts and notes related to genomics and bioinformatics
  ☆217Updated this week
• GangCaoLab / CoolBox
  Jupyter notebook based genomic data visualization toolkit.
  ☆246Updated 4 months ago
• AlexandrovLab / SigProfilerExtractor
  SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…
  ☆163Updated 2 weeks ago
• Xinglab / rmats-turbo
  ☆272Updated 9 months ago
• hms-dbmi / hic-data-analysis-bootcamp
  Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
  ☆203Updated 7 years ago
• FRED-2 / OptiType
  Precision HLA typing from next-generation sequencing data
  ☆202Updated last year
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆483Updated 5 months ago
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆208Updated last month
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆396Updated 2 weeks ago
• griffithlab / pVACtools
  ☆157Updated last week
• kundajelab / chrombpnet
  Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
  ☆177Updated last month
• ENCODE-DCC / rna-seq-pipeline
  ☆154Updated 2 years ago
• simon-anders / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆125Updated 5 years ago
• vanheeringen-lab / seq2science
  Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…
  ☆165Updated 3 months ago
• genialis / RNAnorm
  Normalization of RNA-seq gene expression
  ☆92Updated last month