deeptools / pyBigWigLinks
A python extension for quick access to bigWig and bigBed files
☆239Updated 3 weeks ago
Alternatives and similar repositories for pyBigWig
Users that are interested in pyBigWig are comparing it to the libraries listed below
Sorting:
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆201Updated last week
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆266Updated 6 months ago
- Application for making ENCODE Blacklists☆332Updated 4 years ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆348Updated 2 months ago
- Jupyter notebook based genomic data visualization toolkit.☆249Updated 2 months ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆246Updated last week
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆237Updated 2 months ago
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆175Updated last week
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆328Updated 10 months ago
- SUPPA: Fast quantification of splicing and differential splicing☆294Updated 3 months ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆187Updated 2 weeks ago
- ATAC-seq peak-calling and QC analysis pipeline☆222Updated 2 months ago
- Porting DESeq2 into python via rpy2☆67Updated 2 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆290Updated last year
- [Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing data☆142Updated last year
- TCR and BCR assembly from RNA-seq data☆338Updated 2 weeks ago
- parallel fastq-dump wrapper☆303Updated 2 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated this week
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆181Updated 2 weeks ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆129Updated 5 years ago
- ATAC-seq and DNase-seq processing pipeline☆165Updated 3 years ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆207Updated last week
- ENCODE Uniform processing pipeline for ChIP-seq☆124Updated 5 years ago
- Performant Pythonic GenomicRanges☆493Updated last week
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆229Updated last year
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆381Updated this week
- The tools for your .cool's☆160Updated 7 months ago
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆167Updated 2 months ago
- Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.☆206Updated 7 years ago