A python extension for quick access to bigWig and bigBed files
☆252Oct 11, 2026Updated 2 weeks ago
Alternatives and similar repositories for pyBigWig
Users that are interested in pyBigWig are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- python module to plot beautiful and highly customizable genome browser tracks☆906Oct 3, 2026Updated 3 weeks ago
- Tools to process and analyze deep sequencing data.☆772Updated this week
- A cool place to store your Hi-C☆247Updated this week
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated 2 years ago
- Jupyter notebook based genomic data visualization toolkit.☆260Sep 22, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool for bigWig files.☆119May 23, 2018Updated 8 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆281Updated this week
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 10 years ago
- python wrapper to dpryan79's bigwig library using cffi☆18May 13, 2016Updated 10 years ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆40Sep 15, 2026Updated last month
- Performant Pythonic GenomicRanges☆492Updated this week
- A C library for handling bigWig files☆83Oct 11, 2026Updated 2 weeks ago
- Python bindings to UCSC BigWig and BigBed library☆37Sep 14, 2026Updated last month
- Genomic interval operations on Pandas DataFrames☆196Oct 5, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆94Jan 28, 2025Updated last year
- The tools for your .cool's☆172Mar 19, 2026Updated 7 months ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆330Aug 26, 2026Updated 2 months ago
- Fast alignment and preprocessing of chromatin profiles☆229Mar 20, 2026Updated 7 months ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆911Updated this week
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆85Aug 25, 2020Updated 6 years ago
- MACS -- Model-based Analysis of ChIP-Seq☆789Updated this week
- genes and genomes at your fingertips☆410Jun 9, 2026Updated 4 months ago
- A high-performance BigWig and BigBed library in Rust☆128Aug 14, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆94Oct 17, 2026Updated 2 weeks ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆22Apr 3, 2020Updated 6 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆129Jun 19, 2026Updated 4 months ago
- Extract 3D contacts (.pairs) from sequencing alignments☆138Jul 29, 2026Updated 3 months ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆188Mar 19, 2026Updated 7 months ago
- Fast, flexible and extensible genome browser.☆343Jun 17, 2026Updated 4 months ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆82Oct 31, 2024Updated last year
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- Application for making ENCODE Blacklists☆350Apr 23, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12May 21, 2024Updated 2 years ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆477Jan 15, 2026Updated 9 months ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆13Dec 22, 2025Updated 10 months ago
- ChIP-seq analysis notes from Ming Tang☆854Aug 5, 2024Updated 2 years ago
- This repository hosts a minimal version of a Python API for BPNet.☆61Oct 19, 2026Updated last week
- Efficient pythonic random access to fasta subsequences☆489Updated this week
- Signed LD profile regression code☆20Aug 1, 2025Updated last year