Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.
☆10Sep 13, 2011Updated 15 years ago
Alternatives and similar repositories for chrom_sweep
Users that are interested in chrom_sweep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bedfile perturbation tool☆17Mar 6, 2026Updated 7 months ago
- Simulate short-reads datasets using probabilistic models☆12Jun 1, 2013Updated 13 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 10 years ago
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Jan 23, 2023Updated 3 years ago
- Modified or extracted from other programs☆15Dec 14, 2011Updated 14 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The python binding for D4 format☆16Oct 22, 2021Updated 5 years ago
- Explore and analyze biological sequence data☆19Aug 1, 2024Updated 2 years ago
- BioPerl scripts and utilities☆11Sep 2, 2025Updated last year
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Feb 13, 2018Updated 8 years ago
- 🧪 Pipeline for detecting Ψ modification☆23May 8, 2024Updated 2 years ago
- Exposing public genomics data via computable and searchable metadata☆13Jul 9, 2024Updated 2 years ago
- Python for Command Line Oneliners☆19Jan 5, 2015Updated 11 years ago
- ☆47Jul 16, 2026Updated 3 months ago
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12May 21, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 7 years ago
- The Nifty GNU Sequence Library☆11May 28, 2013Updated 13 years ago
- BED QC tool (in the making)☆18Aug 19, 2022Updated 4 years ago
- Ultrafast interval trees from the kernel. Deprecated in favor of the NCLS.☆26Apr 8, 2019Updated 7 years ago
- A fast and flexible program to annotate/interpret genetic variants in VCF/BCF file☆22Oct 26, 2020Updated 6 years ago
- Modification-induced misincorporation tRNA sequencing☆26Apr 29, 2026Updated 6 months ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 4 years ago
- A file watcher written in Rust☆11May 4, 2026Updated 5 months ago
- ☆13Sep 4, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A terminal UI for monitoring Snakemake workflows☆26Jul 20, 2026Updated 3 months ago
- Code used to generate manuscript figures and results.☆14Jan 10, 2024Updated 2 years ago
- ☆10Oct 21, 2019Updated 7 years ago
- ☆11May 11, 2023Updated 3 years ago
- Haplotype phaser for next-generation sequencing data☆14Jan 13, 2022Updated 4 years ago
- Bam to Pandas DataFrame, quickly☆13May 10, 2025Updated last year
- probability of mendelian error in trios.☆11Jan 27, 2016Updated 10 years ago
- a cythonized, extended version of the interval search tree in bx☆30Jun 4, 2019Updated 7 years ago
- LAAVA: Long-read AAV Analysis☆13Oct 27, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Useful FILe and stream Operations☆45Dec 21, 2015Updated 10 years ago
- A small library for ranges/intervals, for use with genomic data.☆17Nov 27, 2012Updated 13 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 4 years ago
- Simple interval class for fast fasta access☆10Jun 18, 2012Updated 14 years ago
- A method to locate variation clusters☆11Nov 27, 2025Updated 11 months ago
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated 7 months ago
- Heroku/Dash app for inDelphi.☆11Dec 8, 2022Updated 3 years ago