DeepDom is an ab-initio method for protein domain boundary prediction
☆16Sep 5, 2022Updated 3 years ago
Alternatives and similar repositories for DeepDom
Users that are interested in DeepDom are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Nov 26, 2023Updated 2 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆46May 22, 2025Updated 10 months ago
- scBSP is a specialized package designed for processing biological data, specifically in the analysis of gene expression and cell coordina…☆22Mar 22, 2026Updated 3 weeks ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Jun 23, 2018Updated 7 years ago
- This repository contains the stand-alone tool for MusiteDeep server☆36Dec 5, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A deep learning framework for deubiquitnase-substrate interaction identification☆12Jul 31, 2025Updated 8 months ago
- Python/TF1 implementation of DeepAccNet (https://www.biorxiv.org/content/10.1101/2020.07.17.209643v1)☆10Sep 2, 2020Updated 5 years ago
- Scripts for running lsc model on other datasets☆13May 25, 2019Updated 6 years ago
- A tool for domain based annotation with databases from the Conserved Domains Database☆30Mar 18, 2026Updated 3 weeks ago
- An implementation of a Capsule Attention Network.☆10Jan 26, 2018Updated 8 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆11Aug 4, 2020Updated 5 years ago
- The first multimodal QA dataset specifically designed for evaluating large TCM language models.☆21Oct 24, 2025Updated 5 months ago
- 🧬Genomes to proteins, multi-level visualization library☆14Feb 25, 2026Updated last month
- ☆27Feb 16, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- MusiteDeep provides a deep-learning method for general and kinase-specific phosphorylation site prediction. It is implemented by deep lea…☆49Aug 5, 2025Updated 8 months ago
- test☆14Nov 13, 2020Updated 5 years ago
- A machine-learning algorithm to predict CTCF-mediated long-range chromatin interactions☆17Nov 7, 2018Updated 7 years ago
- MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences☆15Jan 14, 2022Updated 4 years ago
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆11Jun 13, 2022Updated 3 years ago
- ☆19Aug 29, 2025Updated 7 months ago
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆27Aug 12, 2021Updated 4 years ago
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Apr 15, 2022Updated 4 years ago
- S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure☆74Mar 26, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 4 years ago
- A Spatial-temporal Gated Attention Module for Molecular Property Prediction Based on Molecular Geometry☆32Apr 17, 2021Updated 4 years ago
- An antibody-specific language model focusing on NGL prediction☆37Aug 22, 2024Updated last year
- ☆22Dec 15, 2022Updated 3 years ago
- ☆75Sep 25, 2024Updated last year
- DeepContact Software☆26Jun 16, 2018Updated 7 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Jan 30, 2022Updated 4 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- STRIDE: Protein secondary structure assignment from atomic coordinates☆15Apr 25, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- This is the Github repository containing the code for the Context-Aware Sequential Recommendation project for the Information Retrieval 2…☆11Mar 24, 2023Updated 3 years ago
- ☆12Mar 22, 2024Updated 2 years ago
- https://grasp.ufv.br/☆16Jul 6, 2023Updated 2 years ago
- ☆16Sep 26, 2025Updated 6 months ago
- MolEnc: a molecular encoder using rdkit and OCaml.☆21Apr 9, 2026Updated last week
- Generate robust DNA barcode sets☆33Feb 6, 2024Updated 2 years ago
- Conformational sampling for highly flexible proteins☆15Jan 31, 2025Updated last year