DeepDom is an ab-initio method for protein domain boundary prediction
☆16Sep 5, 2022Updated 3 years ago
Alternatives and similar repositories for DeepDom
Users that are interested in DeepDom are comparing it to the libraries listed below
Sorting:
- ☆12Nov 26, 2023Updated 2 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆45May 22, 2025Updated 9 months ago
- Python/TF1 implementation of DeepAccNet (https://www.biorxiv.org/content/10.1101/2020.07.17.209643v1)☆10Sep 2, 2020Updated 5 years ago
- A deep learning framework for deubiquitnase-substrate interaction identification☆12Jul 31, 2025Updated 7 months ago
- 🧬Genomes to proteins, multi-level visualization library☆14Feb 25, 2026Updated last week
- test☆14Nov 13, 2020Updated 5 years ago
- A machine-learning algorithm to predict CTCF-mediated long-range chromatin interactions☆17Nov 7, 2018Updated 7 years ago
- Scripts for running lsc model on other datasets☆13May 25, 2019Updated 6 years ago
- MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences☆15Jan 14, 2022Updated 4 years ago
- ☆19Aug 29, 2025Updated 6 months ago
- scBSP is a specialized package designed for processing biological data, specifically in the analysis of gene expression and cell coordina…☆22Feb 3, 2026Updated last month
- ☆22Dec 15, 2022Updated 3 years ago
- ☆21Sep 2, 2025Updated 6 months ago
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆27Aug 12, 2021Updated 4 years ago
- ☆27Feb 16, 2022Updated 4 years ago
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆13Jul 12, 2024Updated last year
- De novo protein structure prediction using iteratively predicted structural constraints☆60Jan 30, 2022Updated 4 years ago
- predict stability change upon mutation☆30Jun 28, 2024Updated last year
- An antibody-specific language model focusing on NGL prediction☆36Aug 22, 2024Updated last year
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Dec 14, 2025Updated 2 months ago
- ☆10Mar 6, 2025Updated last year
- ☆76Sep 25, 2024Updated last year
- A Spatial-temporal Gated Attention Module for Molecular Property Prediction Based on Molecular Geometry☆32Apr 17, 2021Updated 4 years ago
- DeepContact Software☆26Jun 16, 2018Updated 7 years ago
- This repository contains the stand-alone tool for MusiteDeep server☆35Dec 5, 2020Updated 5 years ago
- Collected scripts for Pymol☆10Mar 18, 2015Updated 10 years ago
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆11Jan 25, 2026Updated last month
- Calculation of interatomic interactions in molecular structures☆85Jan 28, 2026Updated last month
- Python generic modular semi-automated platform containing functions for the classification of proteins based on their physicochemical pro…☆35Sep 4, 2023Updated 2 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- This is the official repository of Prot2Token paper.☆38Jun 6, 2025Updated 9 months ago
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 4 years ago
- DeepConv-DTI: Prediction of drug-target interactions via deep learning with convolution on protein sequences☆78Feb 14, 2022Updated 4 years ago
- 能生成Javascript版编译机的yacc☆10May 10, 2011Updated 14 years ago
- A rapid and low-memory multiple-genome aligner for closely related genomes☆24Sep 3, 2025Updated 6 months ago
- ☆11Jun 15, 2019Updated 6 years ago
- pymol implementation of WaterDock with Akshay Sridhar (@akshay-sridhar) and refactoring work by Patrick McCubbin (@mccubbinp)☆11Mar 25, 2024Updated last year
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆10Jan 23, 2026Updated last month
- The ChIP-Seq peak calling algorithm using convolution neural networks☆15Jan 18, 2021Updated 5 years ago