DeepDom is an ab-initio method for protein domain boundary prediction
☆16Sep 5, 2022Updated 4 years ago
Alternatives and similar repositories for DeepDom
Users that are interested in DeepDom are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A deep learning framework for deubiquitnase-substrate interaction identification☆13Jul 31, 2025Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆49May 22, 2025Updated last year
- scBSP is a specialized package designed for processing biological data, specifically in the analysis of gene expression and cell coordina…☆22Jul 23, 2026Updated 3 months ago
- The first multimodal QA dataset specifically designed for evaluating large TCM language models.☆25Oct 24, 2025Updated last year
- ☆22Sep 2, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scripts for running lsc model on other datasets☆13May 25, 2019Updated 7 years ago
- This repository contains the stand-alone tool for MusiteDeep server☆36Dec 5, 2020Updated 5 years ago
- A benchmark dataset for epitope-specific antibody design [Transactions on ML Research - TMLR]☆43Jun 9, 2026Updated 4 months ago
- Python/TF1 implementation of DeepAccNet (https://www.biorxiv.org/content/10.1101/2020.07.17.209643v1)☆10Sep 2, 2020Updated 6 years ago
- A tool for domain based annotation with databases from the Conserved Domains Database☆29May 26, 2026Updated 5 months ago
- An implementation of a Capsule Attention Network.☆10Jan 26, 2018Updated 8 years ago
- Protein structure search based on embeddings☆13Oct 25, 2026Updated last week
- This is the official repository of Prot2Token paper.☆40Jun 6, 2025Updated last year
- Deep transformer for predicting interchain residue-residue distances of protein complexes☆14Mar 19, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆10Aug 4, 2020Updated 6 years ago
- official repo for scPEFT☆53Jan 14, 2026Updated 9 months ago
- MusiteDeep provides a deep-learning method for general and kinase-specific phosphorylation site prediction. It is implemented by deep lea…☆50Aug 5, 2025Updated last year
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆28Aug 12, 2021Updated 5 years ago
- ☆27Feb 16, 2022Updated 4 years ago
- test☆14Nov 13, 2020Updated 5 years ago
- A novel Deep-learning Framework with Multi-head Self-attention for Multi-label mRNA Subcellular Localization Prediction and Analyses☆10Oct 31, 2022Updated 4 years ago
- RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io☆14Nov 3, 2022Updated 4 years ago
- MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences☆15Jan 14, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- 🧬Genomes to proteins, multi-level visualization library☆17Oct 24, 2026Updated last week
- ☆11Sep 2, 2024Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 5 years ago
- A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)☆68Jun 20, 2022Updated 4 years ago
- S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure☆77Aug 27, 2026Updated 2 months ago
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Apr 15, 2022Updated 4 years ago
- This is the Github repository containing the code for the Context-Aware Sequential Recommendation project for the Information Retrieval 2…☆11Mar 24, 2023Updated 3 years ago
- https://grasp.ufv.br/☆17Jul 6, 2023Updated 3 years ago
- DeepContact Software☆26Jun 16, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- All-atom generative protein design using SE(3) flow matching☆28Feb 3, 2026Updated 9 months ago
- Protein binding site prediction with transformers☆18Jul 7, 2026Updated 4 months ago
- A Spatial-temporal Gated Attention Module for Molecular Property Prediction Based on Molecular Geometry☆32Apr 17, 2021Updated 5 years ago
- Extract ligands from original PDB file☆10Nov 1, 2019Updated 7 years ago
- ☆11Mar 30, 2023Updated 3 years ago
- ☆22Dec 15, 2022Updated 3 years ago
- inferring sequence-structure motifs using deep learning☆40Aug 3, 2023Updated 3 years ago