Python package for handling ModelCIF mmCIF and BinaryCIF files
☆14Jul 24, 2026Updated 2 weeks ago
Alternatives and similar repositories for python-modelcif
Users that are interested in python-modelcif are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predict disorder and disorder binding from AlphaFold structures☆20Nov 25, 2024Updated last year
- mmCIF-based extension dictionary for computed structure models☆24Feb 5, 2026Updated 6 months ago
- Structural space exploration of AlphaFold DB☆12Oct 8, 2021Updated 4 years ago
- PocketMaster is a flexible and automated tool for analyzing, clustering, and visualizing protein binding sites. It allows you to quickly …☆19Feb 22, 2026Updated 5 months ago
- Semantic Segmentor for Protein Structures.☆11Dec 20, 2021Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Estimate PTM hotspots in protein sequence alignments☆16Feb 6, 2019Updated 7 years ago
- ☆18Aug 28, 2023Updated 2 years ago
- A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dicti…☆83Jul 21, 2026Updated 2 weeks ago
- Graph Learning of INTER-protein contacts☆10Feb 20, 2022Updated 4 years ago
- Clusters protein chains based on CA distance difference☆18Jul 22, 2026Updated 2 weeks ago
- ☆14Mar 16, 2024Updated 2 years ago
- ☆12Sep 17, 2024Updated last year
- NEFF Calculator and MSA File Converter☆15May 6, 2026Updated 3 months ago
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆28Aug 9, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- 2D portraits of 3D protein structures☆27May 14, 2026Updated 2 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆65May 21, 2025Updated last year
- Docking Tool Benchmarking Workflow☆25Jul 17, 2024Updated 2 years ago
- HBDesigner is an algorithm that designs highly-connected hydrogen bonding networks that fit the requested design constraints onto an inpu…☆17Updated this week
- Protein common interface databases☆10Apr 13, 2019Updated 7 years ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆33Dec 14, 2023Updated 2 years ago
- ☆11Apr 25, 2021Updated 5 years ago
- Docking benchmark 5 - cleaned and ready to use for HADDOCK☆14Apr 13, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python interface for the RCSB search API.☆20Mar 20, 2024Updated 2 years ago
- Python package for handling IHM mmCIF and BinaryCIF files☆18Updated this week
- Bayesian Active Learning for Optimization and Uncertainty Quantification with Applications to Protein Docking☆13Apr 28, 2021Updated 5 years ago
- Tutorial files☆12Aug 7, 2024Updated 2 years ago
- volume calculation and segmentation☆39May 20, 2024Updated 2 years ago
- ☆30Apr 30, 2026Updated 3 months ago
- Mol* as anywidget☆54Oct 13, 2025Updated 9 months ago
- Printing text using protein structures☆14Aug 9, 2021Updated 5 years ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated 2 years ago
- CArbohydrate-Protein Site IdentiFier☆16Aug 22, 2023Updated 2 years ago
- ☆15Jun 25, 2026Updated last month
- ☆22Feb 25, 2025Updated last year
- Scoring methods for predicting the DDG upon protein mutation☆17Feb 20, 2023Updated 3 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- ☆15Aug 13, 2023Updated 2 years ago