Python package for handling ModelCIF mmCIF and BinaryCIF files
☆14Jun 25, 2026Updated 3 weeks ago
Alternatives and similar repositories for python-modelcif
Users that are interested in python-modelcif are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predict disorder and disorder binding from AlphaFold structures☆19Nov 25, 2024Updated last year
- mmCIF-based extension dictionary for computed structure models☆24Feb 5, 2026Updated 5 months ago
- Structural space exploration of AlphaFold DB☆12Oct 8, 2021Updated 4 years ago
- PocketMaster is a flexible and automated tool for analyzing, clustering, and visualizing protein binding sites. It allows you to quickly …☆19Feb 22, 2026Updated 4 months ago
- Semantic Segmentor for Protein Structures.☆11Dec 20, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Estimate PTM hotspots in protein sequence alignments☆15Feb 6, 2019Updated 7 years ago
- ☆18Aug 28, 2023Updated 2 years ago
- Graph Learning of INTER-protein contacts☆10Feb 20, 2022Updated 4 years ago
- Clusters protein chains based on CA distance difference☆18Jun 5, 2026Updated last month
- ☆14Mar 16, 2024Updated 2 years ago
- A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dicti…☆82Jun 30, 2026Updated 3 weeks ago
- ☆12Sep 17, 2024Updated last year
- NEFF Calculator and MSA File Converter☆15May 6, 2026Updated 2 months ago
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆28Aug 9, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 2D portraits of 3D protein structures☆27May 14, 2026Updated 2 months ago
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆65May 21, 2025Updated last year
- CArbohydrate-Protein Site IdentiFier☆16Aug 22, 2023Updated 2 years ago
- Docking Tool Benchmarking Workflow☆25Jul 17, 2024Updated 2 years ago
- Protein common interface databases☆10Apr 13, 2019Updated 7 years ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆33Dec 14, 2023Updated 2 years ago
- ☆11Apr 25, 2021Updated 5 years ago
- Docking benchmark 5 - cleaned and ready to use for HADDOCK☆14Apr 13, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Python interface for the RCSB search API.☆20Mar 20, 2024Updated 2 years ago
- Python package for handling IHM mmCIF and BinaryCIF files☆18Jun 25, 2026Updated 3 weeks ago
- Tutorial files☆12Aug 7, 2024Updated last year
- volume calculation and segmentation☆39May 20, 2024Updated 2 years ago
- ☆30Apr 30, 2026Updated 2 months ago
- Bayesian Active Learning for Optimization and Uncertainty Quantification with Applications to Protein Docking☆13Apr 28, 2021Updated 5 years ago
- Mol* as anywidget☆53Oct 13, 2025Updated 9 months ago
- Printing text using protein structures☆14Aug 9, 2021Updated 4 years ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Jul 25, 2024Updated last year
- ☆22Feb 25, 2025Updated last year
- ☆15Jun 25, 2026Updated 3 weeks ago
- Scoring methods for predicting the DDG upon protein mutation☆17Feb 20, 2023Updated 3 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- ☆15Aug 13, 2023Updated 2 years ago
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆36Jul 28, 2022Updated 3 years ago