Alternatives and similar repositories for cathpy:

Users that are interested in cathpy are comparing it to the libraries listed below

• sokrypton / seqmodels
  ☆31Updated 4 years ago
• emmijokinen / mgpfusion
  mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…
  ☆15Updated 6 years ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆52Updated 3 months ago
• lamoureux-lab / 3DCNN_MQA
  Deep convolutional networks for fold recognition
  ☆22Updated 5 years ago
• wells-wood-research / alphafold2-multiprocessing
  Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing
  ☆23Updated 3 years ago
• BobbyLangan / DeNovoDesignofBioactiveProteinSwitches
  Code used in the manuscript for De Novo Design of Bioactive Protein Switches
  ☆16Updated 5 years ago
• jertubiana / ProteinMotifRBM
  Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
  ☆20Updated 6 years ago
• wells-wood-research / PDBench
  PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
  ☆28Updated 2 years ago
• daisybio / data-leakage-ppi-prediction
  Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'
  ☆23Updated last year
• ba-lab / pdnet
  PDNET: A fully open-source framework for deep learning protein real-valued distances
  ☆35Updated 3 years ago
• ramithuh / diff-evol-tree-search
  We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represe…
  ☆20Updated last year
• soedinglab / CCMgen
  ☆20Updated 3 years ago
• normandavey / ProcessedAlphafold
  ☆31Updated 3 years ago
• psipred / ted-tools
  ML toolset for creating TED: The Encyclopedia of Domains
  ☆19Updated last month
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆57Updated 3 years ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆37Updated last year
• Shen-Lab / BAL
  Bayesian Active Learning for Optimization and Uncertainty Quantification with Applications to Protein Docking
  ☆13Updated 4 years ago
• jscant / PointVS
  SE(3)-equivariant point cloud networks for virtual screening
  ☆20Updated 2 years ago
• ElwynWang / DeepFragLib
  ☆29Updated 4 years ago
• modernatx / therapeutic_enzyme_engineering_with_generative_neural_networks
  ☆12Updated 2 years ago
• JinLi711 / UTGN
  Universal Transforming Geometric Network for protein structure prediction.
  ☆8Updated 4 years ago
• matteofigliuzzi / bmDCA
  ☆18Updated 7 years ago
• songlab-cal / mogwai
  ☆25Updated 3 years ago
• pagnani / PlmDCA.jl
  Pseudo Likelihood Maximization for protein in Julia
  ☆51Updated 4 months ago
• soedinglab / pdbx
  pdbx is a parser module in python for structures of the protein data bank in the mmcif format
  ☆26Updated 9 months ago
• Kortemme-Lab / ddg
  A DDG benchmark capture containing the benchmark dataset and benchmarked protocol captures.
  ☆17Updated 9 years ago
• EleutherAI / mp_nerf
  Massively-Parallel Natural Extension of Reference Frame
  ☆31Updated 2 years ago
• google-research / slip
  SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.
  ☆19Updated last year
• ShintaroMinami / mican
  Non-sequential structural alignment program for protein structure
  ☆19Updated 6 months ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆42Updated last year