msternke / protein-consensus-sequenceLinks
A set a basic Python scripts to edit a multiple sequence alignment and generate a protein consensus sequence
☆18Updated 3 years ago
Alternatives and similar repositories for protein-consensus-sequence
Users that are interested in protein-consensus-sequence are comparing it to the libraries listed below
Sorting:
- Fast protein domain structure embedding+search tool☆26Updated last month
- Feature map and function annotation of Proteins☆33Updated last year
- DeepECtransformer☆28Updated 2 years ago
- Virus Protein Structural Analysis Toolkit☆14Updated last year
- ☆17Updated 3 years ago
- Conservation analysis of homologous proteins with Python☆12Updated 4 years ago
- Python framework for doing ancestral sequence reconstruction☆41Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…☆37Updated 3 months ago
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆17Updated 3 years ago
- ☆30Updated 2 years ago
- Detection of remote homology by comparison of protein language model representations☆56Updated 10 months ago
- Code for LazyAF pipeline☆21Updated last year
- Next generation sequence parameter library for proteins☆35Updated last month
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated 2 years ago
- ☆12Updated 10 months ago
- Transmembrane proteins predicted through Language Model embeddings☆39Updated 3 months ago
- Multi-Species Codon Optimization Engine☆27Updated 3 months ago
- ☆43Updated last year
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- Long disorder consensus predictor☆17Updated 2 months ago
- Multi-label subcellular localization and sorting signal prediction based on protein foundation models☆20Updated last week
- Evolutionary conservation estimation of residues or nucleotides☆51Updated 3 years ago
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆17Updated 2 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆61Updated 3 months ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- Automatic oligonucleotide design for PCR-based gene synthesis☆47Updated 6 years ago
- ☆23Updated 2 years ago
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆40Updated last week
- Multi-class signal peptide prediction and structure decoding model.☆96Updated 8 months ago