msternke / protein-consensus-sequence
A set a basic Python scripts to edit a multiple sequence alignment and generate a protein consensus sequence
☆15Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for protein-consensus-sequence
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Updated 7 months ago
- Conservation analysis of homologous proteins with Python☆9Updated 3 years ago
- Feature map and function annotation of Proteins☆30Updated 5 months ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated last year
- Code for LazyAF pipeline☆21Updated 9 months ago
- ☆15Updated 2 years ago
- Evolutionary conservation estimation of residues or nucleotides☆33Updated 2 years ago
- Python framework for doing ancestral sequence reconstruction☆34Updated 4 months ago
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆15Updated 2 years ago
- Transmembrane proteins predicted through Language Model embeddings☆30Updated 8 months ago
- ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures☆14Updated 2 years ago
- Next generation sequence parameter library for proteins☆23Updated last week
- Peptide library design☆19Updated 4 years ago
- Gaussian process models for optimizing channelrhodopsin properties.☆11Updated 4 years ago
- Detection of remote homology by comparison of protein language model representations☆44Updated this week
- DeepECtransformer☆22Updated last year
- ☆20Updated last year
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆18Updated 8 months ago
- ☆29Updated last month
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆48Updated 3 months ago
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆16Updated last year
- ☆29Updated last year
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆18Updated 3 months ago
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆36Updated 2 months ago
- GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…☆12Updated 7 months ago
- Graph-based representation learning method for protein function prediction☆24Updated 4 years ago
- Method for constructing embeddings of GO terms.☆14Updated 2 years ago
- Rendering protein mutation movies from predicted 3D structures☆20Updated 11 months ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆13Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆27Updated last year