shichence / ProtSeed
Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"
☆22Updated last year
Related projects ⓘ
Alternatives and complementary repositories for ProtSeed
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆53Updated 5 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆32Updated last week
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆44Updated last year
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆30Updated 11 months ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆47Updated last month
- ☆57Updated 5 months ago
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆24Updated 3 weeks ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆39Updated last year
- ☆11Updated last month
- Code for ProSST: A Pre-trained Protein Sequence and Structure Transformer with Disentangled Attention.☆42Updated 3 weeks ago
- The code for NeurIPS 2023 paper DSR☆10Updated last year
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆25Updated last year
- ☆20Updated 2 years ago
- ☆31Updated 3 weeks ago
- Reaction-Conditioned Virtual Screening of Enzymes☆21Updated 3 months ago
- This repo contains the codes for our paper "Generalist Equivariant Transformer Towards 3D Molecular Interaction Learning" (ICML 2024).☆24Updated 2 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆51Updated 6 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆51Updated last year
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆67Updated last year
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆87Updated last year
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆65Updated 8 months ago
- Official repository of ReactZyme☆19Updated last month
- This repository implements Gibbs sampling with Graph-based Smoothing☆36Updated 5 months ago
- Code for 'On Pre-trained Language Models For Antibody'☆30Updated last year
- Evaluating Protein Binding Interfaces with Transformer Networks☆40Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆20Updated last month
- GeoSSL: Molecular Geometry Pretraining with SE(3)-Invariant Denoising Distance Matching, ICLR'23 (https://openreview.net/forum?id=CjTHVo1…☆42Updated last year
- Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"☆11Updated last year
- Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2024…☆47Updated 3 weeks ago