shichence / ProtSeed
Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"
☆24Updated last year
Alternatives and similar repositories for ProtSeed:
Users that are interested in ProtSeed are comparing it to the libraries listed below
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆46Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆57Updated 11 months ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆39Updated last year
- ☆11Updated 4 months ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆57Updated 10 months ago
- ☆15Updated 5 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆58Updated last year
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆35Updated last year
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆55Updated this week
- The code for NeurIPS 2023 paper DSR☆11Updated last year
- Bib'23: Improved the Heterodimer Protein Complex Prediction with Protein Language Models☆15Updated last year
- protein structure generation with sparse all-atom denoising models☆30Updated 2 months ago
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆25Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆33Updated 10 months ago
- Generative diverse protein backbones by protein language model☆31Updated 4 months ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆75Updated 3 months ago
- ☆20Updated 2 years ago
- Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoop☆11Updated 10 months ago
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆91Updated 2 years ago
- Official repository of ReactZyme☆29Updated 6 months ago
- Official implementation of "Learning the language of protein structures"☆27Updated 4 months ago
- Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraints☆30Updated 3 months ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆63Updated last month
- This repository implements Gibbs sampling with Graph-based Smoothing☆38Updated 10 months ago
- Code for 'On Pre-trained Language Models For Antibody'☆33Updated 2 years ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆70Updated 6 months ago
- This repo contains the codes for our paper "Generalist Equivariant Transformer Towards 3D Molecular Interaction Learning" (ICML 2024).☆30Updated 7 months ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆52Updated this week
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆40Updated 5 months ago