shichence / ProtSeedLinks
Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"
☆24Updated 2 years ago
Alternatives and similar repositories for ProtSeed
Users that are interested in ProtSeed are comparing it to the libraries listed below
Sorting:
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Updated 2 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 5 months ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆59Updated last year
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Updated 2 years ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆72Updated 2 years ago
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆97Updated 2 years ago
- Official implementation of "Learning the language of protein structures"☆39Updated 4 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆78Updated last year
- Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"☆90Updated last year
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆120Updated 8 months ago
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆69Updated last year
- Official repository of ReactZyme☆36Updated last year
- ☆22Updated 11 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆49Updated 11 months ago
- ☆12Updated 10 months ago
- Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraints☆40Updated 3 months ago
- ☆33Updated last year
- ☆65Updated 2 years ago
- ☆76Updated 8 months ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Updated last year
- ☆27Updated last year
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆64Updated 8 months ago
- A Novel Approach for Protein Sequence Design Based on Secondary Strucure☆22Updated 7 months ago
- diffusion model for protein sequence generation☆50Updated 2 years ago
- Implementation of MapDiff: "Mask-prior-guided denoising diffusion improves inverse protein folding" in PyTorch☆39Updated 3 months ago
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆33Updated 2 months ago
- The first large protein language model trained follows structure instructions.☆86Updated 5 months ago