CongLabCode / DPAMLinks
A domain parser for Alphafold models
☆46Updated 2 years ago
Alternatives and similar repositories for DPAM
Users that are interested in DPAM are comparing it to the libraries listed below
Sorting:
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- ☆47Updated last year
- GTalign, high-performance protein structure alignment, superposition and search☆52Updated 5 months ago
- ☆33Updated last year
- Detection of remote homology by comparison of protein language model representations☆61Updated last year
- Fast indexing and search of discontinuous motifs in protein structures☆113Updated last week
- Machine learning prediction of enzyme optimum pH☆50Updated 9 months ago
- A tool for protein and protein complex structure prediction.☆29Updated 7 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆63Updated 10 months ago
- ☆56Updated 5 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆46Updated 8 months ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆78Updated 4 months ago
- ☆32Updated 3 weeks ago
- ☆87Updated 2 months ago
- Fast protein domain structure embedding+search tool☆27Updated 4 months ago
- ColabFold protocol☆56Updated last year
- ☆23Updated 2 years ago
- Graph Network for protein-protein interface including language model features☆34Updated last year
- scripts and facilities for in-silico mutagenesis with FoldX☆65Updated last month
- Learning the language of protein-protein interactions☆127Updated 3 weeks ago
- Fast protein structure searching or your money back☆118Updated 3 weeks ago
- Transmembrane proteins predicted through Language Model embeddings☆44Updated 6 months ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆110Updated last week
- ☆76Updated last year
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆16Updated last year
- ☆39Updated 7 months ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆79Updated 5 months ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆71Updated last year
- Mutation effects predicted from sequence co-variation☆72Updated 8 years ago
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆29Updated 2 weeks ago