A domain parser for Alphafold models
☆49Dec 12, 2023Updated 2 years ago
Alternatives and similar repositories for DPAM
Users that are interested in DPAM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆39Jul 28, 2022Updated 4 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆47May 22, 2025Updated last year
- Fast protein structure searching or your money back☆119Apr 13, 2026Updated 4 months ago
- ☆51Sep 25, 2024Updated last year
- Fast indexing and search of discontinuous motifs in protein structures☆213Jul 10, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆212Apr 21, 2025Updated last year
- Compressing protein structures effectively with torsion angles☆194Aug 3, 2026Updated 3 weeks ago
- ☆31Dec 12, 2024Updated last year
- DomainMapper is a parser for hmmscan full output files built centrally around ECOD domain definitions. Users can optimize DomainMapper's …☆13Dec 13, 2023Updated 2 years ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆99Aug 29, 2023Updated 3 years ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆42Sep 27, 2024Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆135Aug 3, 2025Updated last year
- Metal and Water prediction☆16Feb 5, 2025Updated last year
- ☆18Mar 13, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆82Oct 27, 2021Updated 4 years ago
- ☆100Updated this week
- Building more accurate protein structures from backbone torsion angles☆16Mar 21, 2025Updated last year
- GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…☆17Mar 27, 2024Updated 2 years ago
- Deep Learning tool trained on protein sequence embeddings from protein language models to accurately detect remote homologues for CATH su…☆14Jun 22, 2022Updated 4 years ago
- A collection of *fold* tools☆23Nov 10, 2022Updated 3 years ago
- Functions and classes for doing Gaussian process models of proteins☆11Apr 13, 2018Updated 8 years ago
- Neural Iterative Selection-Expansion using LigandMPNN/LASErMPNN and Boltz-2x☆66Aug 11, 2026Updated 2 weeks ago
- ancestral reconstruction and likelihood analysis for CRISPR spacer arrays☆11May 7, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ML toolset for creating TED: The Encyclopedia of Domains☆28May 29, 2025Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆189Apr 21, 2024Updated 2 years ago
- ☆92Sep 25, 2024Updated last year
- An open-source platform for developing protein models beyond AlphaFold.☆421Jun 26, 2024Updated 2 years ago
- ☆47Sep 16, 2024Updated last year
- ☆93Feb 11, 2026Updated 6 months ago
- Deep learning based prediction of temperature dependent enzyme turnover rates☆18Nov 24, 2024Updated last year
- Making Protein Design accessible to all via Google Colab!☆934Updated this week
- Multiple Protein Structure Alignment at Scale with FoldMason☆281May 11, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Deep functional residue identification☆354Mar 24, 2023Updated 3 years ago
- ☆110Nov 28, 2023Updated 2 years ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆190Oct 7, 2025Updated 10 months ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆158Nov 15, 2024Updated last year
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆30Dec 21, 2023Updated 2 years ago
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆106Jun 9, 2025Updated last year
- End-to-end Reaction-Path Modeling from PDB Structures Using Machine-Learning Interatomic Potentials☆15Updated this week