☆33Mar 2, 2026Updated 5 months ago
Alternatives and similar repositories for SoftAlign
Users that are interested in SoftAlign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆174Jul 24, 2026Updated 2 weeks ago
- Fast and Interpretable Protein Substructure Alignment via Optimal Transport (ICLR 2026)☆27Jun 26, 2026Updated last month
- Modelling protein conformations with Alphafold3☆16Jun 11, 2026Updated last month
- A tool for 2D protein visualization aimed at improving the comparability of protein structures through standardized 2D visualizations.☆23Mar 13, 2026Updated 4 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- HBDesigner is an algorithm that designs highly-connected hydrogen bonding networks that fit the requested design constraints onto an inpu…☆17Updated this week
- ☆47Sep 16, 2024Updated last year
- ☆92Sep 25, 2024Updated last year
- A generalized computational framework for biomolecular modeling.☆440Updated this week
- Fast indexing and search of discontinuous motifs in protein structures☆209Jul 10, 2026Updated last month
- ☆64Sep 14, 2023Updated 2 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆46May 22, 2025Updated last year
- Official repository of GENzyme☆67Nov 29, 2024Updated last year
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆59Jul 15, 2026Updated 3 weeks ago
- Learning the language of protein-protein interactions☆153Jun 15, 2026Updated last month
- a universal molecular interaction modeling platform based on AlphaFold3, supporting structure prediction and analysis for various recepto…☆49Nov 20, 2025Updated 8 months ago
- Official repository of EnzymeFlow☆103Dec 7, 2024Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Mar 22, 2024Updated 2 years ago
- Code for ColabDock paper☆157May 1, 2025Updated last year
- Protein Structure Archiver☆15Sep 10, 2025Updated 11 months ago
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆261Nov 5, 2025Updated 9 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆167Mar 28, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Profluent-E1 family of Protein Encoder Models☆114Mar 11, 2026Updated 4 months ago
- IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.☆227Jun 23, 2026Updated last month
- ☆30Aug 8, 2025Updated last year
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆270Jul 24, 2025Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- bakerlab pymol scripts☆27Feb 6, 2020Updated 6 years ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆85May 27, 2026Updated 2 months ago
- ☆54Apr 23, 2026Updated 3 months ago
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆93Oct 6, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆29Mar 8, 2025Updated last year
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated 2 years ago
- ☆18May 15, 2026Updated 2 months ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆99Aug 29, 2023Updated 2 years ago
- ☆20Sep 14, 2022Updated 3 years ago
- ☆40Jun 17, 2025Updated last year
- ☆22Jan 23, 2026Updated 6 months ago