JudeWells / chainsawLinks
☆40Updated 9 months ago
Alternatives and similar repositories for chainsaw
Users that are interested in chainsaw are comparing it to the libraries listed below
Sorting:
- Fast protein domain structure embedding+search tool☆21Updated last month
- A domain parser for Alphafold models☆38Updated last year
- ☆21Updated last month
- ☆30Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated 2 months ago
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆15Updated 5 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆22Updated 2 weeks ago
- Detection of remote homology by comparison of protein language model representations☆54Updated 6 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆88Updated last year
- Machine learning prediction of enzyme optimum pH☆44Updated last month
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆45Updated 3 weeks ago
- ☆22Updated last year
- ☆36Updated this week
- ☆49Updated 2 months ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆38Updated 9 months ago
- Python framework for doing ancestral sequence reconstruction☆38Updated 11 months ago
- Python package to manage protein structures and their annotations☆43Updated last year
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆56Updated 3 months ago
- ☆68Updated 9 months ago
- Transmembrane proteins predicted through Language Model embeddings☆37Updated last month
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆40Updated last month
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆24Updated 3 months ago
- ☆23Updated last month
- A tool for protein and protein complex structure prediction.☆29Updated 2 weeks ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year
- GraphPart, a data partitioning method for ML on biological sequences☆28Updated last year
- ML toolset for creating TED: The Encyclopedia of Domains☆21Updated 3 weeks ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆28Updated last year