Alternatives and similar repositories for chainsaw

Users that are interested in chainsaw are comparing it to the libraries listed below

• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆40Updated last year
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• UCLOrengoGroup / cath-alphaflow
  ☆22Updated 4 months ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆45Updated 4 months ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆55Updated 9 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆26Updated 3 months ago
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆81Updated last week
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆59Updated 5 months ago
• minmarg / gtalign_alpha
  GTalign, high-performance protein structure alignment, superposition and search
  ☆50Updated last month
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆41Updated 3 months ago
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆70Updated 3 weeks ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆32Updated last year
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated 2 years ago
• tymor22 / tm-vec
  ☆68Updated 11 months ago
• seanrjohnson / esmologs
  Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.
  ☆15Updated 8 months ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆44Updated last year
• psipred / ted-tools
  ML toolset for creating TED: The Encyclopedia of Domains
  ☆22Updated 3 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆52Updated last month
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆39Updated last month
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆27Updated 6 months ago
• jtrinquier / SoftAlign
  ☆27Updated last month
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆37Updated 3 weeks ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• TattaBio / gLM2
  ☆71Updated 11 months ago
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆106Updated 4 months ago
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
  ☆58Updated 6 months ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆73Updated last week
• greener-group / progres
  Fast protein structure searching or your money back
  ☆112Updated 5 months ago