☆48Sep 25, 2024Updated last year
Alternatives and similar repositories for chainsaw
Users that are interested in chainsaw are comparing it to the libraries listed below
Sorting:
- Fast and accurate protein domain segmentation using Invariant Point Attention☆45May 22, 2025Updated 9 months ago
- ☆24Nov 14, 2025Updated 4 months ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 2 years ago
- Compressing protein structures effectively with torsion angles☆189Feb 10, 2026Updated last month
- Benchmarking code accompanying the release of `bioemu`☆56Nov 25, 2025Updated 3 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆127Feb 24, 2026Updated 3 weeks ago
- ML toolset for creating TED: The Encyclopedia of Domains☆26May 29, 2025Updated 9 months ago
- A domain parser for Alphafold models☆46Dec 12, 2023Updated 2 years ago
- GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…☆16Mar 27, 2024Updated last year
- Domain-PFP is a self-supervised method to predict protein functions from the domains☆14Nov 1, 2023Updated 2 years ago
- SWift and Optimized Recognition of protein Domains☆30Mar 12, 2026Updated last week
- ☆18Aug 28, 2023Updated 2 years ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- ☆47Sep 16, 2024Updated last year
- Fast protein domain structure embedding+search tool☆27Sep 21, 2025Updated 5 months ago
- ☆15Sep 29, 2025Updated 5 months ago
- ☆25Apr 26, 2023Updated 2 years ago
- Fast protein structure searching or your money back☆118Updated this week
- Transformer for protein function prediction (version 2)☆15Jan 8, 2026Updated 2 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Aug 26, 2024Updated last year
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆22Nov 25, 2025Updated 3 months ago
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆124Jan 16, 2026Updated 2 months ago
- Scripts to generate and analyze afdb clusters☆11Sep 15, 2023Updated 2 years ago
- ☆96Oct 14, 2025Updated 5 months ago
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated 3 weeks ago
- A standardized protein design benchmark for motif-scaffolding problems☆76Jan 27, 2026Updated last month
- ☆37Dec 21, 2023Updated 2 years ago
- Bilingual Language Model for Protein Sequence and Structure☆303Mar 6, 2026Updated 2 weeks ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆122Aug 3, 2025Updated 7 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆258Jan 31, 2026Updated last month
- 3D-CNN based water position prediction method☆11Nov 20, 2023Updated 2 years ago
- Collection of useful bioinformatic functions and tools for various computational biology pipelines☆43Updated this week
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆34Nov 18, 2023Updated 2 years ago
- protein backbone refinement☆15Sep 12, 2024Updated last year
- ☆15Apr 3, 2025Updated 11 months ago
- ☆32Mar 2, 2026Updated 2 weeks ago
- [NeurIPS 2024] MSA generative pretraining for advancing protein structure prediction☆34Mar 18, 2025Updated last year
- ☆18Feb 25, 2026Updated 3 weeks ago
- Protein representation and design under a single training scheme☆24Mar 3, 2026Updated 2 weeks ago